Wall clock time and date at job start Sun Mar 29 2020 21:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28129 * 126.03728 * 2 1 4 4 O 1.41382 * 113.24309 * 180.23345 * 3 2 1 5 5 C 1.44250 * 107.50844 * 342.68616 * 4 3 2 6 6 H 1.08994 * 111.01518 * 267.04405 * 5 4 3 7 7 C 1.50699 * 111.04446 * 143.18380 * 5 4 3 8 8 O 1.21298 * 119.99878 * 2.82674 * 7 5 4 9 9 N 1.34775 * 120.00110 * 182.82483 * 7 5 4 10 10 C 1.46500 * 119.99914 * 359.97438 * 9 7 5 11 11 C 1.37094 * 119.99980 * 180.02562 * 9 7 5 12 12 H 1.08001 * 120.00447 * 21.79591 * 11 9 7 13 13 C 1.38956 * 119.99676 * 201.80107 * 11 9 7 14 14 N 1.31404 * 120.00115 * 14.94217 * 13 11 9 15 15 Si 1.86801 * 119.99973 * 194.94127 * 13 11 9 16 16 H 1.48508 * 109.46967 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47017 * 119.99871 * 15 13 11 18 18 H 1.48494 * 109.47213 * 240.00162 * 15 13 11 19 19 C 1.51679 * 125.76592 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.46994 * 270.00538 * 1 2 3 21 21 H 1.09001 * 109.46399 * 29.99782 * 1 2 3 22 22 H 1.08997 * 109.47172 * 150.00065 * 1 2 3 23 23 H 1.09000 * 109.46819 * 90.20120 * 10 9 7 24 24 H 1.09000 * 109.47262 * 210.19928 * 10 9 7 25 25 H 1.09004 * 109.47264 * 330.20004 * 10 9 7 26 26 H 0.97001 * 120.00158 * 180.02562 * 14 13 11 27 27 H 1.09002 * 110.80451 * 77.02699 * 19 2 1 28 28 H 1.08998 * 110.81322 * 313.71771 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2609 1.0361 0.0000 4 8 3.6396 0.7230 -0.0053 5 6 3.7733 -0.6548 0.4004 6 1 3.9318 -0.7320 1.4760 7 6 4.8837 -1.3365 -0.3568 8 8 5.5575 -0.7057 -1.1437 9 7 5.1281 -2.6472 -0.1595 10 6 4.3147 -3.4090 0.7914 11 6 6.1386 -3.2672 -0.8480 12 1 6.9467 -2.6833 -1.2632 13 6 6.1229 -4.6470 -1.0117 14 7 5.0217 -5.3242 -0.7760 15 14 7.6673 -5.5393 -1.5667 16 1 8.7633 -4.5565 -1.7630 17 1 8.0677 -6.5263 -0.5320 18 1 7.3990 -6.2443 -2.8458 19 6 2.3936 -1.2307 0.0006 20 1 -0.3633 0.0001 1.0277 21 1 -0.3632 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 3.4561 -3.8370 0.2738 24 1 4.9149 -4.2099 1.2230 25 1 3.9677 -2.7469 1.5847 26 1 5.0109 -6.2874 -0.8899 27 1 2.4343 -1.6790 -0.9922 28 1 2.0486 -1.9562 0.7373 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824855437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:09 Heat of formation + Delta-G solvation = -4.405159 kcal Electronic energy + Delta-G solvation = -14286.553058 eV Core-core repulsion = 11726.382921 eV Total energy + Delta-G solvation = -2560.170137 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04559 -37.92070 -34.80965 -33.46731 -31.95889 -30.24291 -28.27991 -26.35960 -25.13174 -23.17337 -19.91285 -18.86877 -17.03280 -16.74740 -15.74647 -15.33415 -14.88557 -14.27382 -13.99480 -13.63423 -13.21755 -12.80937 -12.61648 -12.35072 -11.93100 -11.73951 -11.55043 -11.36568 -11.08770 -10.96008 -10.42203 -10.36783 -10.28029 -9.24477 -9.12056 -8.38224 -7.80005 -6.42623 -3.96520 2.01398 3.09207 3.20662 3.25040 3.34116 3.67386 4.08464 4.31753 4.58409 4.87086 4.99690 5.04548 5.27963 5.42636 5.45485 5.54915 5.65646 5.84930 5.99590 6.17692 6.26911 6.70753 7.04466 7.49175 7.65522 8.02223 8.38516 9.08162 9.28738 9.84366 10.62047 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.008507 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.924392 B = 3290.775016 C = 3614.855558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.075 3.925 3 N -0.303 5.303 4 O -0.170 6.170 5 C 0.036 3.964 6 H 0.094 0.906 7 C 0.448 3.552 8 O -0.566 6.566 9 N -0.438 5.438 10 C 0.107 3.893 11 C -0.307 4.307 12 H 0.102 0.898 13 C 0.032 3.968 14 N -0.880 5.880 15 Si 0.927 3.073 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.140 4.140 20 H 0.087 0.913 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.025 0.975 26 H 0.268 0.732 27 H 0.106 0.894 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 1.287 4.806 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 N -0.044 5.044 4 O -0.189 6.189 5 C -0.026 4.026 6 H 0.112 0.888 7 C 0.234 3.766 8 O -0.449 6.449 9 N -0.159 5.159 10 C -0.036 4.036 11 C -0.434 4.434 12 H 0.119 0.881 13 C -0.171 4.171 14 N -0.519 5.519 15 Si 0.754 3.246 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.180 4.180 20 H 0.105 0.895 21 H 0.099 0.901 22 H 0.105 0.895 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.125 0.875 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.555 2.607 4.355 9.947 hybrid contribution 0.664 -1.681 -0.089 1.809 sum -7.891 0.926 4.266 9.018 Atomic orbital electron populations 1.20372 0.85532 1.04286 1.03777 1.26397 0.97894 0.92680 0.94850 1.77930 0.90108 1.23525 1.12819 1.91344 1.14122 1.25611 1.87830 1.23470 0.95670 0.83734 0.99751 0.88813 1.19470 0.86951 0.83871 0.86328 1.90570 1.50987 1.64589 1.38766 1.43512 1.30114 1.06396 1.35847 1.21617 0.96521 0.94970 0.90529 1.19744 1.00898 0.90234 1.32572 0.88073 1.25334 0.98106 0.96884 0.96796 1.69998 1.25507 1.08338 1.48078 0.85841 0.81433 0.79165 0.78179 1.19099 1.20548 1.20659 1.23102 0.91025 0.98142 1.05686 0.89468 0.90111 0.89512 0.92182 0.90792 0.95619 0.92154 0.87548 0.87616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.49 36.01 0.38 -0.38 15 2 C 0.08 1.11 7.48 -78.38 -0.59 0.53 15 3 N -0.30 -5.68 12.47 35.87 0.45 -5.23 15 4 O -0.17 -3.85 11.84 -30.16 -0.36 -4.20 15 5 C 0.04 0.74 3.25 -26.96 -0.09 0.65 15 6 H 0.09 1.69 7.39 -51.93 -0.38 1.31 15 7 C 0.45 11.43 7.01 -10.99 -0.08 11.36 15 8 O -0.57 -16.95 16.28 -13.25 -0.22 -17.16 15 9 N -0.44 -11.14 3.02 -122.19 -0.37 -11.51 15 10 C 0.11 2.27 7.37 59.85 0.44 2.71 15 11 C -0.31 -8.51 9.28 -14.93 -0.14 -8.65 15 12 H 0.10 2.97 7.41 -52.49 -0.39 2.58 15 13 C 0.03 0.84 5.03 -17.47 -0.09 0.75 15 14 N -0.88 -22.65 10.79 55.50 0.60 -22.05 15 15 Si 0.93 20.40 29.58 -169.99 -5.03 15.37 15 16 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 19 C -0.14 -2.28 5.45 -26.47 -0.14 -2.42 15 20 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.08 0.70 8.14 -51.93 -0.42 0.28 15 22 H 0.09 0.65 8.14 -51.93 -0.42 0.22 15 23 H 0.06 1.27 7.58 -51.93 -0.39 0.88 15 24 H 0.07 1.65 6.98 -51.93 -0.36 1.29 15 25 H 0.03 0.44 6.05 -51.93 -0.31 0.13 15 26 H 0.27 6.51 8.31 -40.82 -0.34 6.17 15 27 H 0.11 1.91 7.90 -51.93 -0.41 1.50 15 28 H 0.11 1.38 7.45 -51.93 -0.39 1.00 15 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -33.26 244.15 -4.59 -37.85 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -3.04 Total: -1.29 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.30 Total: 4.54 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.68 Total: -38.79 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.57 Total: -21.36 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -33.26 -4.59 -37.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824855437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.448 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds