Wall clock time and date at job start Sun Mar 29 2020 21:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28129 * 126.03728 * 2 1 4 4 O 1.41382 * 113.24309 * 180.23345 * 3 2 1 5 5 C 1.44250 * 107.50844 * 342.68616 * 4 3 2 6 6 H 1.08994 * 111.01518 * 267.04405 * 5 4 3 7 7 C 1.50699 * 111.04446 * 143.18380 * 5 4 3 8 8 O 1.21298 * 119.99878 * 2.82674 * 7 5 4 9 9 N 1.34775 * 120.00110 * 182.82483 * 7 5 4 10 10 C 1.46500 * 119.99914 * 359.97438 * 9 7 5 11 11 C 1.37094 * 119.99980 * 180.02562 * 9 7 5 12 12 H 1.08001 * 120.00447 * 21.79591 * 11 9 7 13 13 C 1.38956 * 119.99676 * 201.80107 * 11 9 7 14 14 N 1.31404 * 120.00115 * 14.94217 * 13 11 9 15 15 Si 1.86801 * 119.99973 * 194.94127 * 13 11 9 16 16 H 1.48508 * 109.46967 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47017 * 119.99871 * 15 13 11 18 18 H 1.48494 * 109.47213 * 240.00162 * 15 13 11 19 19 C 1.51679 * 125.76592 * 179.97438 * 2 1 3 20 20 H 1.09001 * 109.46994 * 270.00538 * 1 2 3 21 21 H 1.09001 * 109.46399 * 29.99782 * 1 2 3 22 22 H 1.08997 * 109.47172 * 150.00065 * 1 2 3 23 23 H 1.09000 * 109.46819 * 90.20120 * 10 9 7 24 24 H 1.09000 * 109.47262 * 210.19928 * 10 9 7 25 25 H 1.09004 * 109.47264 * 330.20004 * 10 9 7 26 26 H 0.97001 * 120.00158 * 180.02562 * 14 13 11 27 27 H 1.09002 * 110.80451 * 77.02699 * 19 2 1 28 28 H 1.08998 * 110.81322 * 313.71771 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2609 1.0361 0.0000 4 8 3.6396 0.7230 -0.0053 5 6 3.7733 -0.6548 0.4004 6 1 3.9318 -0.7320 1.4760 7 6 4.8837 -1.3365 -0.3568 8 8 5.5575 -0.7057 -1.1437 9 7 5.1281 -2.6472 -0.1595 10 6 4.3147 -3.4090 0.7914 11 6 6.1386 -3.2672 -0.8480 12 1 6.9467 -2.6833 -1.2632 13 6 6.1229 -4.6470 -1.0117 14 7 5.0217 -5.3242 -0.7760 15 14 7.6673 -5.5393 -1.5667 16 1 8.7633 -4.5565 -1.7630 17 1 8.0677 -6.5263 -0.5320 18 1 7.3990 -6.2443 -2.8458 19 6 2.3936 -1.2307 0.0006 20 1 -0.3633 0.0001 1.0277 21 1 -0.3632 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 3.4561 -3.8370 0.2738 24 1 4.9149 -4.2099 1.2230 25 1 3.9677 -2.7469 1.5847 26 1 5.0109 -6.2874 -0.8899 27 1 2.4343 -1.6790 -0.9922 28 1 2.0486 -1.9562 0.7373 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824855437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:09 Heat of formation + Delta-G solvation = -28.051358 kcal Electronic energy + Delta-G solvation = -14287.578434 eV Core-core repulsion = 11726.382921 eV Total energy + Delta-G solvation = -2561.195513 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.57774 -39.73176 -36.80937 -34.78675 -33.92194 -31.81593 -29.24875 -28.20056 -26.95060 -24.84264 -21.43192 -20.39090 -19.02448 -18.43963 -17.23077 -17.04420 -16.57121 -16.05385 -15.60436 -15.17074 -14.55385 -14.16995 -13.93994 -13.60421 -13.54649 -13.27969 -13.19425 -13.05221 -12.69257 -12.55061 -12.36310 -12.13822 -11.62695 -11.07815 -10.79923 -10.24725 -9.79596 -8.42644 -6.05982 0.81431 1.31661 1.40361 1.52996 1.78232 1.83873 2.29015 2.91116 3.00154 3.11306 3.46654 3.61832 3.82186 3.95720 4.40823 4.50638 4.64475 4.73745 4.83007 4.86219 4.97895 5.30449 5.32662 5.39696 5.98085 6.30528 6.43092 7.06584 7.30620 7.87294 8.60054 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.008507 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.924392 B = 3290.775016 C = 3614.855558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.108 3.892 3 N -0.337 5.337 4 O -0.225 6.225 5 C 0.039 3.961 6 H 0.120 0.880 7 C 0.431 3.569 8 O -0.629 6.629 9 N -0.444 5.444 10 C 0.112 3.888 11 C -0.353 4.353 12 H 0.067 0.933 13 C 0.008 3.992 14 N -0.884 5.884 15 Si 0.989 3.011 16 H -0.278 1.278 17 H -0.260 1.260 18 H -0.273 1.273 19 C -0.136 4.136 20 H 0.120 0.880 21 H 0.088 0.912 22 H 0.112 0.888 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.278 0.722 27 H 0.089 0.911 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.305 -0.291 5.917 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 N -0.083 5.083 4 O -0.239 6.239 5 C -0.023 4.023 6 H 0.137 0.863 7 C 0.219 3.781 8 O -0.517 6.517 9 N -0.163 5.163 10 C -0.030 4.030 11 C -0.480 4.480 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.522 5.522 15 Si 0.812 3.188 16 H -0.203 1.203 17 H -0.185 1.185 18 H -0.198 1.198 19 C -0.175 4.175 20 H 0.138 0.862 21 H 0.107 0.893 22 H 0.131 0.869 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.795 0.986 5.501 12.156 hybrid contribution 1.238 -1.268 -0.452 1.829 sum -9.557 -0.281 5.049 10.812 Atomic orbital electron populations 1.20723 0.80877 1.05954 1.06288 1.27279 1.00022 0.90780 0.90387 1.77996 0.88291 1.24769 1.17288 1.91311 1.17471 1.26367 1.88736 1.23398 0.95637 0.83364 0.99925 0.86276 1.20406 0.87617 0.83880 0.86199 1.90509 1.53492 1.65989 1.41703 1.43748 1.29789 1.06785 1.35931 1.21691 0.95538 0.95137 0.90659 1.19638 1.01868 0.91164 1.35354 0.91489 1.26020 1.00915 0.96561 0.96023 1.70024 1.26356 1.09053 1.46741 0.84950 0.77558 0.77824 0.78430 1.20328 1.18475 1.19821 1.23157 0.89053 0.99406 1.05918 0.86216 0.89330 0.86929 0.91927 0.92201 0.91285 0.91185 0.89248 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.49 71.24 0.75 -0.36 15 2 C 0.11 2.89 7.48 46.83 0.35 3.24 15 3 N -0.34 -12.36 12.47 -40.39 -0.50 -12.87 15 4 O -0.22 -10.37 11.84 -20.33 -0.24 -10.61 15 5 C 0.04 1.57 3.25 30.45 0.10 1.67 15 6 H 0.12 4.10 7.39 -2.39 -0.02 4.08 15 7 C 0.43 22.72 7.01 87.66 0.61 23.34 15 8 O -0.63 -40.03 16.28 14.88 0.24 -39.79 15 9 N -0.44 -22.91 3.02 -658.88 -1.99 -24.89 15 10 C 0.11 4.56 7.37 127.77 0.94 5.50 15 11 C -0.35 -20.17 9.28 84.04 0.78 -19.39 15 12 H 0.07 4.20 7.41 -2.91 -0.02 4.18 15 13 C 0.01 0.43 5.03 84.93 0.43 0.85 15 14 N -0.88 -44.34 10.79 21.66 0.23 -44.11 15 15 Si 0.99 41.56 29.58 68.60 2.03 43.59 15 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 19 C -0.14 -4.10 5.45 30.76 0.17 -3.94 15 20 H 0.12 1.02 8.14 -2.39 -0.02 1.00 15 21 H 0.09 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.11 1.06 8.14 -2.39 -0.02 1.04 15 23 H 0.06 2.50 7.58 -2.39 -0.02 2.49 15 24 H 0.06 2.59 6.98 -2.39 -0.02 2.57 15 25 H 0.07 2.17 6.05 -2.39 -0.01 2.16 15 26 H 0.28 12.89 8.31 -92.71 -0.77 12.12 15 27 H 0.09 3.09 7.90 -2.39 -0.02 3.07 15 28 H 0.15 3.18 7.45 -2.39 -0.02 3.16 15 Total: -1.00 -77.09 244.15 5.07 -72.02 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 1.17 Total: 5.74 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 4.13 Total: 10.91 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.26 Total: -81.87 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: 0.00 Total: -50.40 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -77.09 5.07 -72.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824855437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.970 kcal (2) G-P(sol) polarization free energy of solvation -77.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds