Wall clock time and date at job start Sun Mar 29 2020 21:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33877 * 122.44399 * 2 1 4 4 S 1.70622 * 110.97073 * 179.74788 * 3 2 1 5 5 C 1.75828 * 91.56534 * 0.22856 * 4 3 2 6 6 C 1.46337 * 125.46218 * 180.02562 * 5 4 3 7 7 O 1.21673 * 119.99930 * 179.97438 * 6 5 4 8 8 O 1.34897 * 120.00155 * 359.97438 * 6 5 4 9 9 C 1.34860 * 116.99721 * 179.97438 * 8 6 5 10 10 H 1.07990 * 120.00436 * 0.02562 * 9 8 6 11 11 C 1.38783 * 119.99285 * 180.02562 * 9 8 6 12 12 N 1.31438 * 120.00474 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99501 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47291 * 60.00553 * 13 11 9 15 15 H 1.48509 * 109.46991 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47454 * 300.00079 * 13 11 9 17 17 C 1.36814 * 109.07523 * 0.02562 * 5 4 3 18 18 H 1.09005 * 109.46877 * 90.02425 * 1 2 3 19 19 H 1.08992 * 109.47662 * 210.02424 * 1 2 3 20 20 H 1.09009 * 109.46894 * 330.02658 * 1 2 3 21 21 H 1.08002 * 124.51732 * 0.02562 * 3 2 1 22 22 H 0.97002 * 119.99824 * 179.97438 * 12 11 9 23 23 H 1.07996 * 123.36987 * 180.02562 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2252 1.1298 0.0000 4 16 3.8973 0.7904 0.0070 5 6 3.5948 -0.9416 0.0030 6 6 4.6228 -1.9830 0.0065 7 8 4.3003 -3.1562 0.0037 8 8 5.9281 -1.6424 0.0130 9 6 6.8239 -2.6504 0.0165 10 1 6.4836 -3.6753 0.0137 11 6 8.1832 -2.3706 0.0237 12 7 8.5974 -1.1232 0.0275 13 14 9.4241 -3.7669 0.0278 14 1 9.2358 -4.6001 -1.1869 15 1 10.7995 -3.2068 0.0361 16 1 9.2237 -4.6038 1.2381 17 6 2.2441 -1.1596 -0.0040 18 1 -0.3633 -0.0004 -1.0277 19 1 -0.3634 -0.8897 0.5142 20 1 -0.3633 0.8903 0.5135 21 1 1.8025 2.1237 0.0004 22 1 9.5475 -0.9277 0.0329 23 1 1.8014 -2.1446 -0.0073 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837760539.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:26 Heat of formation + Delta-G solvation = -54.288640 kcal Electronic energy + Delta-G solvation = -11376.576810 eV Core-core repulsion = 9088.870589 eV Total energy + Delta-G solvation = -2287.706221 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.02984 -37.73502 -35.10279 -32.23048 -30.66506 -27.61755 -25.84564 -23.78242 -20.34239 -18.57192 -17.84435 -17.60293 -15.62009 -15.09188 -14.64000 -14.38958 -13.71091 -13.64578 -12.89165 -12.48100 -11.89424 -11.85042 -11.77751 -11.58794 -11.20538 -10.49318 -10.48149 -10.40306 -9.89276 -9.18552 -8.64918 -8.41226 -8.01954 -6.49476 -4.12209 0.96753 1.99293 2.44085 2.72839 3.15970 3.16522 3.20309 3.88665 3.94488 4.52301 5.09684 5.20331 5.33684 5.54176 5.69391 5.81318 6.02498 6.14464 6.53398 6.73600 6.89529 7.32318 7.86562 8.62387 8.98100 9.75202 10.67683 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.067821 B = 0.007882 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.752849 B = 3551.661280 C = 3949.263999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.117 4.117 3 C -0.271 4.271 4 S 0.242 5.758 5 C -0.203 4.203 6 C 0.458 3.542 7 O -0.546 6.546 8 O -0.204 6.204 9 C -0.374 4.374 10 H 0.099 0.901 11 C 0.041 3.959 12 N -0.856 5.856 13 Si 0.948 3.052 14 H -0.268 1.268 15 H -0.278 1.278 16 H -0.268 1.268 17 C -0.087 4.087 18 H 0.065 0.935 19 H 0.065 0.935 20 H 0.062 0.938 21 H 0.161 0.839 22 H 0.273 0.727 23 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.665 4.938 -0.040 10.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C -0.409 4.409 4 S 0.511 5.489 5 C -0.322 4.322 6 C 0.306 3.694 7 O -0.445 6.445 8 O -0.111 6.111 9 C -0.450 4.450 10 H 0.116 0.884 11 C -0.164 4.164 12 N -0.492 5.492 13 Si 0.772 3.228 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.193 1.193 17 C -0.119 4.119 18 H 0.084 0.916 19 H 0.084 0.916 20 H 0.081 0.919 21 H 0.179 0.821 22 H 0.082 0.918 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.175 5.712 -0.031 9.973 hybrid contribution -0.740 -1.431 -0.011 1.611 sum -8.916 4.281 -0.042 9.891 Atomic orbital electron populations 1.20452 0.90069 1.02343 1.01935 1.18626 0.97349 0.91642 1.05471 1.25213 1.00265 1.02802 1.12633 1.83518 1.00975 0.98480 1.65925 1.23933 0.96380 0.96948 1.14953 1.19399 0.83240 0.86544 0.80240 1.90681 1.82671 1.19226 1.51918 1.83938 1.13156 1.39070 1.74976 1.21285 0.84759 0.87430 1.51541 0.88363 1.25411 0.96792 0.98114 0.96079 1.69986 1.16239 1.17970 1.45043 0.85670 0.78221 0.79395 0.79485 1.19331 1.20242 1.19335 1.20493 0.90776 0.99643 1.00949 0.91578 0.91629 0.91917 0.82136 0.91755 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 10.13 36.00 0.36 -0.61 14 2 C -0.12 -1.76 5.78 -106.46 -0.62 -2.37 14 3 C -0.27 -3.94 10.67 29.20 0.31 -3.62 14 4 S 0.24 4.31 22.92 -107.50 -2.46 1.84 14 5 C -0.20 -4.37 6.45 -36.84 -0.24 -4.60 14 6 C 0.46 12.21 7.86 33.99 0.27 12.48 14 7 O -0.55 -15.52 16.09 -19.40 -0.31 -15.83 14 8 O -0.20 -6.01 9.60 -22.11 -0.21 -6.22 14 9 C -0.37 -11.16 9.65 30.93 0.30 -10.86 14 10 H 0.10 2.93 6.86 -52.49 -0.36 2.57 14 11 C 0.04 1.16 5.50 -17.52 -0.10 1.06 14 12 N -0.86 -24.85 13.67 55.49 0.76 -24.09 14 13 Si 0.95 21.14 29.55 -169.99 -5.02 16.12 14 14 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 14 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 17 C -0.09 -1.58 9.80 -40.40 -0.40 -1.97 14 18 H 0.07 0.66 8.14 -51.93 -0.42 0.23 14 19 H 0.06 0.67 8.13 -51.93 -0.42 0.25 14 20 H 0.06 0.59 8.12 -51.92 -0.42 0.16 14 21 H 0.16 1.81 8.06 -52.49 -0.42 1.38 14 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 14 23 H 0.15 2.58 8.06 -52.49 -0.42 2.16 14 LS Contribution 234.67 15.07 3.54 3.54 Total: -1.00 -32.50 234.67 -5.43 -37.92 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -1.61 Total: -2.76 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.10 Total: -10.51 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.76 Total: -24.09 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.52 Total: -22.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -2.46 Total: 1.84 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -32.50 -5.43 -37.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837760539.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.367 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds