Wall clock time and date at job start Sun Mar 29 2020 21:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70444 * 124.59613 * 2 1 4 4 C 1.75503 * 92.45601 * 180.02562 * 3 2 1 5 5 C 1.32735 * 110.61093 * 359.71393 * 4 3 2 6 6 C 1.36145 * 124.59922 * 179.97438 * 2 1 3 7 7 C 1.47003 * 123.48147 * 0.02562 * 6 2 1 8 8 O 1.21585 * 119.99690 * 359.97438 * 7 6 2 9 9 O 1.34823 * 119.99985 * 179.97438 * 7 6 2 10 10 C 1.34889 * 116.99974 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99679 * 359.73075 * 10 9 7 12 12 C 1.38765 * 119.99919 * 179.97438 * 10 9 7 13 13 N 1.31444 * 119.99835 * 359.72650 * 12 10 9 14 14 Si 1.86798 * 119.99684 * 179.72871 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00339 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99898 * 14 12 10 18 18 H 1.09002 * 109.47057 * 269.99972 * 1 2 3 19 19 H 1.08994 * 109.47208 * 29.99836 * 1 2 3 20 20 H 1.09001 * 109.46765 * 150.00093 * 1 2 3 21 21 H 1.08000 * 124.69345 * 179.97438 * 4 3 2 22 22 H 1.08002 * 123.45677 * 180.25049 * 5 4 3 23 23 H 0.97000 * 120.00082 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4031 0.0000 4 6 3.9609 0.4694 -0.0008 5 6 3.6956 -0.8312 0.0052 6 6 2.2801 -1.1207 0.0005 7 6 1.7313 -2.4844 0.0006 8 8 0.5276 -2.6553 0.0006 9 8 2.5629 -3.5457 0.0006 10 6 1.9946 -4.7690 0.0011 11 1 0.9188 -4.8646 0.0060 12 6 2.7921 -5.9046 0.0006 13 7 4.1013 -5.7881 -0.0059 14 14 2.0050 -7.5986 0.0091 15 1 0.5268 -7.4576 0.0163 16 1 2.4256 -8.3459 -1.2031 17 1 2.4370 -8.3390 1.2218 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 4.9538 0.8943 -0.0014 22 1 4.4595 -1.5946 0.0098 23 1 4.6589 -6.5819 -0.0066 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838106709.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:23 Heat of formation + Delta-G solvation = -54.038969 kcal Electronic energy + Delta-G solvation = -11600.777510 eV Core-core repulsion = 9313.082115 eV Total energy + Delta-G solvation = -2287.695395 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.13446 -36.84874 -34.98782 -32.17984 -31.47024 -27.24343 -25.25252 -23.17283 -21.05364 -18.91300 -17.71268 -16.80670 -15.83995 -15.04333 -14.63361 -14.32948 -13.55180 -13.33367 -12.97133 -12.46695 -12.12331 -11.76866 -11.61857 -11.24861 -11.18000 -10.72572 -10.44205 -10.40668 -9.81894 -8.91845 -8.60202 -8.41492 -8.06974 -6.44245 -4.07463 1.18627 1.84209 2.21862 2.51395 3.15327 3.18843 3.26563 3.98059 4.11544 4.75785 5.08768 5.15571 5.43392 5.60882 5.92588 6.08396 6.09384 6.42441 6.55990 6.76159 6.99277 7.39416 7.93736 8.71503 9.04705 9.86018 10.73811 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.059694 B = 0.008236 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.945230 B = 3399.060854 C = 3852.854824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.157 4.157 3 S 0.137 5.863 4 C -0.246 4.246 5 C -0.082 4.082 6 C -0.123 4.123 7 C 0.455 3.545 8 O -0.551 6.551 9 O -0.205 6.205 10 C -0.375 4.375 11 H 0.098 0.902 12 C 0.040 3.960 13 N -0.861 5.861 14 Si 0.944 3.056 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.276 1.276 18 H 0.074 0.926 19 H 0.059 0.941 20 H 0.105 0.895 21 H 0.165 0.835 22 H 0.158 0.842 23 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 10.740 -0.016 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.276 4.276 3 S 0.401 5.599 4 C -0.380 4.380 5 C -0.111 4.111 6 C -0.137 4.137 7 C 0.303 3.697 8 O -0.450 6.450 9 O -0.112 6.112 10 C -0.451 4.451 11 H 0.115 0.885 12 C -0.164 4.164 13 N -0.498 5.498 14 Si 0.769 3.231 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.201 1.201 18 H 0.093 0.907 19 H 0.078 0.922 20 H 0.123 0.877 21 H 0.182 0.818 22 H 0.175 0.825 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.369 12.076 -0.016 12.153 hybrid contribution 0.171 -2.378 0.036 2.385 sum -1.197 9.697 0.020 9.771 Atomic orbital electron populations 1.20577 0.87095 1.03947 1.03179 1.24334 1.01457 0.96321 1.05478 1.82643 0.95961 1.08287 1.72970 1.25270 1.01487 0.97067 1.14171 1.21492 0.95401 0.96142 0.98080 1.19634 0.92674 0.91984 1.09444 1.20051 0.85095 0.85194 0.79409 1.90573 1.16134 1.86380 1.51952 1.83944 1.38102 1.14072 1.75088 1.21346 0.93566 0.78787 1.51404 0.88458 1.25369 0.95342 0.99430 0.96255 1.70001 1.03356 1.30374 1.46045 0.85588 0.79363 0.80034 0.78135 1.18881 1.20132 1.20140 0.90739 0.92202 0.87655 0.81800 0.82464 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.60 36.01 0.35 -1.12 14 2 C -0.16 -2.82 6.35 -35.06 -0.22 -3.05 14 3 S 0.14 1.92 22.97 -107.50 -2.47 -0.55 14 4 C -0.25 -3.66 11.12 28.85 0.32 -3.34 14 5 C -0.08 -1.54 10.13 -39.01 -0.40 -1.93 14 6 C -0.12 -2.63 5.98 -104.64 -0.63 -3.25 14 7 C 0.46 11.94 7.86 34.28 0.27 12.21 14 8 O -0.55 -15.02 13.31 -19.33 -0.26 -15.28 14 9 O -0.21 -6.03 9.47 -21.99 -0.21 -6.23 14 10 C -0.37 -11.19 9.65 30.93 0.30 -10.89 14 11 H 0.10 2.91 6.86 -52.49 -0.36 2.55 14 12 C 0.04 1.14 5.49 -17.52 -0.10 1.04 14 13 N -0.86 -25.18 13.67 55.48 0.76 -24.42 14 14 Si 0.94 21.30 29.55 -169.99 -5.02 16.28 14 15 H -0.26 -5.88 7.11 56.52 0.40 -5.48 14 16 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 17 H -0.28 -6.02 7.11 56.52 0.40 -5.61 14 18 H 0.07 1.15 8.14 -51.93 -0.42 0.73 14 19 H 0.06 0.78 8.14 -51.93 -0.42 0.36 14 20 H 0.11 2.01 5.94 -51.93 -0.31 1.70 14 21 H 0.16 1.90 8.06 -52.49 -0.42 1.47 14 22 H 0.16 3.02 8.06 -52.49 -0.42 2.60 14 23 H 0.27 7.19 8.31 -40.82 -0.34 6.85 14 LS Contribution 229.99 15.07 3.47 3.47 Total: -1.00 -32.18 229.99 -5.33 -37.51 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -1.49 Total: -0.45 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.11 Total: -10.32 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.76 Total: -24.42 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.47 Total: -21.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.47 Total: -0.55 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.18 -5.33 -37.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838106709.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.529 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds