Wall clock time and date at job start Sun Mar 29 2020 21:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.70444 * 124.59613 * 2 1 4 4 C 1.75503 * 92.45601 * 180.02562 * 3 2 1 5 5 C 1.32735 * 110.61093 * 359.71393 * 4 3 2 6 6 C 1.36145 * 124.59922 * 179.97438 * 2 1 3 7 7 C 1.47003 * 123.48147 * 0.02562 * 6 2 1 8 8 O 1.21585 * 119.99690 * 359.97438 * 7 6 2 9 9 O 1.34823 * 119.99985 * 179.97438 * 7 6 2 10 10 C 1.34889 * 116.99974 * 179.97438 * 9 7 6 11 11 H 1.07997 * 119.99679 * 359.73075 * 10 9 7 12 12 C 1.38765 * 119.99919 * 179.97438 * 10 9 7 13 13 N 1.31444 * 119.99835 * 359.72650 * 12 10 9 14 14 Si 1.86798 * 119.99684 * 179.72871 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00339 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99898 * 14 12 10 18 18 H 1.09002 * 109.47057 * 269.99972 * 1 2 3 19 19 H 1.08994 * 109.47208 * 29.99836 * 1 2 3 20 20 H 1.09001 * 109.46765 * 150.00093 * 1 2 3 21 21 H 1.08000 * 124.69345 * 179.97438 * 4 3 2 22 22 H 1.08002 * 123.45677 * 180.25049 * 5 4 3 23 23 H 0.97000 * 120.00082 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4031 0.0000 4 6 3.9609 0.4694 -0.0008 5 6 3.6956 -0.8312 0.0052 6 6 2.2801 -1.1207 0.0005 7 6 1.7313 -2.4844 0.0006 8 8 0.5276 -2.6553 0.0006 9 8 2.5629 -3.5457 0.0006 10 6 1.9946 -4.7690 0.0011 11 1 0.9188 -4.8646 0.0060 12 6 2.7921 -5.9046 0.0006 13 7 4.1013 -5.7881 -0.0059 14 14 2.0050 -7.5986 0.0091 15 1 0.5268 -7.4576 0.0163 16 1 2.4256 -8.3459 -1.2031 17 1 2.4370 -8.3390 1.2218 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 0.8899 -0.5138 20 1 -0.3633 -0.8900 -0.5138 21 1 4.9538 0.8943 -0.0014 22 1 4.4595 -1.5946 0.0098 23 1 4.6589 -6.5819 -0.0066 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838106709.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:23 Heat of formation + Delta-G solvation = -75.017098 kcal Electronic energy + Delta-G solvation = -11601.687190 eV Core-core repulsion = 9313.082115 eV Total energy + Delta-G solvation = -2288.605075 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10540 -38.46914 -37.00559 -34.32983 -32.85677 -28.92039 -27.18581 -24.77520 -22.64016 -20.68356 -19.86992 -18.32396 -17.48569 -16.86557 -16.63247 -16.19810 -15.21029 -14.81895 -14.30253 -14.22548 -13.62815 -13.57919 -13.21523 -13.01676 -12.59914 -12.39374 -12.18662 -12.08953 -11.93893 -10.90094 -10.72154 -9.76549 -9.35446 -8.57189 -6.34453 -0.25755 0.55412 0.89758 0.95459 1.33192 1.40487 1.52361 2.13206 2.23390 2.92440 2.99355 3.75733 4.10433 4.28352 4.61627 4.64867 4.71681 5.05347 5.09267 5.13138 5.31744 5.39505 5.80725 6.61504 6.87459 7.74674 8.64144 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.059694 B = 0.008236 C = 0.007266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.945230 B = 3399.060854 C = 3852.854824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.165 4.165 3 S 0.263 5.737 4 C -0.228 4.228 5 C -0.116 4.116 6 C -0.176 4.176 7 C 0.452 3.548 8 O -0.573 6.573 9 O -0.237 6.237 10 C -0.420 4.420 11 H 0.083 0.917 12 C -0.005 4.005 13 N -0.901 5.901 14 Si 1.021 2.979 15 H -0.264 1.264 16 H -0.258 1.258 17 H -0.258 1.258 18 H 0.083 0.917 19 H 0.100 0.900 20 H 0.070 0.930 21 H 0.205 0.795 22 H 0.136 0.864 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 12.813 0.012 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.284 4.284 3 S 0.528 5.472 4 C -0.363 4.363 5 C -0.144 4.144 6 C -0.191 4.191 7 C 0.301 3.699 8 O -0.473 6.473 9 O -0.145 6.145 10 C -0.496 4.496 11 H 0.100 0.900 12 C -0.205 4.205 13 N -0.538 5.538 14 Si 0.840 3.160 15 H -0.188 1.188 16 H -0.183 1.183 17 H -0.183 1.183 18 H 0.101 0.899 19 H 0.119 0.881 20 H 0.089 0.911 21 H 0.222 0.778 22 H 0.154 0.846 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.284 14.182 0.012 14.240 hybrid contribution 0.114 -2.690 0.025 2.692 sum -1.171 11.492 0.037 11.552 Atomic orbital electron populations 1.20620 0.86330 1.04291 1.03785 1.24867 1.02865 0.97905 1.02808 1.82251 0.92534 1.03431 1.68966 1.25781 1.04398 0.95822 1.10269 1.21261 0.93800 0.97652 1.01711 1.19576 0.94667 0.90065 1.14788 1.21093 0.84960 0.86599 0.77233 1.90529 1.17025 1.87166 1.52588 1.83969 1.39150 1.14704 1.76700 1.21541 0.93380 0.80046 1.54623 0.89964 1.26607 0.95901 1.03423 0.94618 1.70087 1.04844 1.32260 1.46587 0.84522 0.78176 0.73988 0.79339 1.18822 1.18261 1.18281 0.89886 0.88096 0.91111 0.77800 0.84586 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.60 71.24 0.68 -2.20 14 2 C -0.16 -5.66 6.35 25.20 0.16 -5.50 14 3 S 0.26 6.10 22.97 -56.49 -1.30 4.80 14 4 C -0.23 -6.04 11.12 66.65 0.74 -5.29 14 5 C -0.12 -4.36 10.13 22.69 0.23 -4.13 14 6 C -0.18 -7.69 5.98 -19.88 -0.12 -7.81 14 7 C 0.45 25.21 7.86 70.12 0.55 25.76 14 8 O -0.57 -33.14 13.31 19.56 0.26 -32.88 14 9 O -0.24 -14.90 9.47 10.05 0.10 -14.81 14 10 C -0.42 -26.60 9.65 67.95 0.66 -25.95 14 11 H 0.08 5.26 6.86 -2.91 -0.02 5.24 14 12 C -0.01 -0.31 5.49 84.88 0.47 0.16 14 13 N -0.90 -54.43 13.67 21.63 0.30 -54.14 14 14 Si 1.02 44.45 29.55 68.60 2.03 46.48 14 15 H -0.26 -11.32 7.11 99.48 0.71 -10.62 14 16 H -0.26 -10.44 7.11 99.48 0.71 -9.74 14 17 H -0.26 -10.45 7.11 99.48 0.71 -9.75 14 18 H 0.08 2.45 8.14 -2.39 -0.02 2.43 14 19 H 0.10 2.28 8.14 -2.39 -0.02 2.26 14 20 H 0.07 2.75 5.94 -2.39 -0.01 2.74 14 21 H 0.21 3.69 8.06 -2.91 -0.02 3.66 14 22 H 0.14 5.56 8.06 -2.91 -0.02 5.54 14 23 H 0.28 15.19 8.31 -92.71 -0.77 14.42 14 Total: -1.00 -75.30 229.99 5.98 -69.32 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.23 Total: 6.19 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 3.37 Total: -24.96 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 0.30 Total: -54.14 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: 0.36 Total: -47.69 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 6.10 SS G_CDS: -1.30 Total: 4.80 kcal Total: -75.30 5.98 -69.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838106709.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.695 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds