Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 112.85369 * 2 1 4 4 C 1.53787 * 113.61077 * 131.30514 * 2 1 3 5 5 C 1.53951 * 87.11072 * 139.90762 * 4 2 1 6 6 C 1.53777 * 87.02147 * 334.63749 * 5 4 2 7 7 H 1.08997 * 113.61665 * 270.76832 * 6 5 4 8 8 N 1.46901 * 113.61684 * 139.94898 * 6 5 4 9 9 C 1.46904 * 111.00220 * 105.86084 * 8 6 5 10 10 C 1.52992 * 109.47370 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47114 * 60.00262 * 10 9 8 12 12 C 1.53006 * 109.47272 * 300.00398 * 10 9 8 13 13 C 1.50693 * 109.47396 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99585 * 4.71031 * 13 10 9 15 15 C 1.37885 * 120.00437 * 184.70460 * 13 10 9 16 16 N 1.31514 * 119.99694 * 152.05942 * 15 13 10 17 17 Si 1.86796 * 119.99960 * 332.06470 * 15 13 10 18 18 H 1.48490 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46996 * 59.99390 * 17 15 13 20 20 H 1.48502 * 109.47182 * 299.99978 * 17 15 13 21 21 H 1.09002 * 109.47493 * 191.19434 * 1 2 3 22 22 H 1.09001 * 109.47558 * 311.19993 * 1 2 3 23 23 H 1.09004 * 109.47050 * 71.19867 * 1 2 3 24 24 H 1.08996 * 113.61626 * 254.53162 * 4 2 1 25 25 H 1.09006 * 113.61475 * 25.34952 * 4 2 1 26 26 H 1.09004 * 113.66879 * 220.10996 * 5 4 2 27 27 H 1.09009 * 113.61260 * 89.16009 * 5 4 2 28 28 H 1.00906 * 110.99966 * 341.90925 * 8 6 5 29 29 H 1.09002 * 109.46644 * 60.00296 * 9 8 6 30 30 H 1.09001 * 109.47282 * 300.00730 * 9 8 6 31 31 H 1.09007 * 109.47131 * 172.80654 * 11 10 9 32 32 H 1.09004 * 109.47128 * 292.80638 * 11 10 9 33 33 H 1.08996 * 109.47357 * 52.80586 * 11 10 9 34 34 H 1.08997 * 109.46778 * 292.23833 * 12 10 9 35 35 H 1.09004 * 109.47153 * 52.23599 * 12 10 9 36 36 H 1.08998 * 109.47063 * 172.23421 * 12 10 9 37 37 H 0.96999 * 120.00485 * 354.89240 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1459 -0.9301 1.0585 5 6 3.1926 -1.3161 -0.0024 6 6 2.1460 -0.9282 -1.0601 7 1 1.4939 -1.7515 -1.3516 8 7 2.7107 -0.2125 -2.2120 9 6 2.7694 -1.0818 -3.3948 10 6 3.3622 -0.3033 -4.5710 11 6 4.7737 0.1658 -4.2124 12 6 2.4825 0.9114 -4.8739 13 6 3.4218 -1.1949 -5.7844 14 1 3.0026 -2.1895 -5.7448 15 6 4.0113 -0.7409 -6.9453 16 7 4.5603 -1.5947 -7.7814 17 14 4.0303 1.0869 -7.3302 18 1 4.7188 1.3127 -8.6263 19 1 4.7521 1.8119 -6.2538 20 1 2.6354 1.5892 -7.4160 21 1 -0.3634 -1.0081 0.1995 22 1 -0.3634 0.6769 0.7732 23 1 -0.3633 0.3312 -0.9729 24 1 2.5649 -0.4008 1.9143 25 1 1.4938 -1.7541 1.3484 26 1 3.4430 -2.3770 -0.0044 27 1 4.0725 -0.6725 -0.0021 28 1 3.6216 0.1627 -1.9935 29 1 1.7639 -1.4163 -3.6500 30 1 3.3964 -1.9469 -3.1792 31 1 5.2438 0.6078 -5.0910 32 1 4.7184 0.9093 -3.4172 33 1 5.3644 -0.6852 -3.8737 34 1 1.5207 0.5758 -5.2613 35 1 2.3262 1.4838 -3.9595 36 1 2.9742 1.5399 -5.6164 37 1 4.6167 -2.5344 -7.5477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839162868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = 12.070421 kcal Electronic energy + Delta-G solvation = -14696.426529 eV Core-core repulsion = 12474.062927 eV Total energy + Delta-G solvation = -2222.363602 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23102 -36.54829 -32.81156 -31.08002 -29.54751 -26.12718 -25.42084 -24.37439 -23.04444 -22.40175 -19.59926 -18.52004 -16.73354 -15.68079 -14.90733 -14.53658 -13.97773 -13.70110 -13.27898 -13.02938 -12.79717 -12.45440 -12.20458 -11.88656 -11.62704 -11.57285 -11.48066 -11.00039 -10.76134 -10.45298 -10.19381 -9.99927 -9.97669 -9.77383 -9.75186 -8.86236 -8.70997 -8.03451 -7.73807 -6.42435 -3.97978 3.44237 3.50882 3.72033 4.56242 4.58825 4.68561 4.81753 4.93298 5.18010 5.26850 5.51367 5.64792 5.71756 5.76688 5.85818 5.97320 6.03002 6.04343 6.15851 6.22123 6.37450 6.43618 6.50843 6.61432 6.70079 6.73562 6.93311 6.99465 7.10509 7.46039 7.65470 7.68185 7.93778 8.35778 8.42995 8.95614 9.65230 10.93299 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052414 B = 0.007546 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.075835 B = 3709.515806 C = 3865.220971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.172 4.172 6 C 0.073 3.927 7 H 0.090 0.910 8 N -0.679 5.679 9 C 0.085 3.915 10 C 0.045 3.955 11 C -0.143 4.143 12 C -0.138 4.138 13 C -0.606 4.606 14 H 0.054 0.946 15 C 0.041 3.959 16 N -0.896 5.896 17 Si 1.052 2.948 18 H -0.302 1.302 19 H -0.277 1.277 20 H -0.288 1.288 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.338 0.662 29 H 0.058 0.942 30 H 0.017 0.983 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 3.159 14.906 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.108 0.892 4 C -0.175 4.175 5 C -0.212 4.212 6 C -0.039 4.039 7 H 0.109 0.891 8 N -0.309 5.309 9 C -0.043 4.043 10 C 0.044 3.956 11 C -0.200 4.200 12 C -0.195 4.195 13 C -0.644 4.644 14 H 0.072 0.928 15 C -0.165 4.165 16 N -0.528 5.528 17 Si 0.886 3.114 18 H -0.231 1.231 19 H -0.205 1.205 20 H -0.216 1.216 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.157 0.843 29 H 0.077 0.923 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.307 4.517 13.535 14.905 hybrid contribution 0.286 -1.796 1.401 2.296 sum -4.022 2.721 14.937 15.706 Atomic orbital electron populations 1.21673 0.95165 1.00988 1.01719 1.22682 0.95411 0.98936 0.95296 0.89186 1.22872 0.98465 0.99582 0.96628 1.23657 0.97899 1.01311 0.98297 1.23089 0.96089 0.95538 0.89140 0.89148 1.60537 1.29625 1.36735 1.04050 1.21958 0.99553 0.93419 0.89357 1.18398 0.90673 0.93174 0.93374 1.22220 0.99428 0.98682 0.99695 1.22171 0.99818 0.98562 0.98994 1.21783 1.43617 1.01446 0.97528 0.92758 1.25668 0.91759 1.05784 0.93304 1.70854 1.36236 1.05129 1.40606 0.84209 0.76203 0.76428 0.74610 1.23080 1.20513 1.21612 0.93185 0.93251 0.92125 0.91836 0.90502 0.91924 0.90237 0.84285 0.92309 0.96418 0.92825 0.95542 0.94455 0.93727 0.93677 0.95231 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.71 37.16 0.36 -1.20 16 2 C -0.10 -1.27 4.16 -89.81 -0.37 -1.65 16 3 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.14 -1.49 7.64 -25.83 -0.20 -1.69 16 5 C -0.17 -2.15 7.72 -25.83 -0.20 -2.35 16 6 C 0.07 1.04 3.72 -66.90 -0.25 0.79 16 7 H 0.09 1.35 7.84 -51.93 -0.41 0.94 16 8 N -0.68 -11.60 5.70 -105.87 -0.60 -12.20 16 9 C 0.09 1.76 4.44 -3.83 -0.02 1.74 16 10 C 0.05 1.06 0.57 -155.66 -0.09 0.97 16 11 C -0.14 -3.17 7.62 37.16 0.28 -2.89 16 12 C -0.14 -3.12 7.46 37.16 0.28 -2.84 16 13 C -0.61 -17.03 8.42 -34.44 -0.29 -17.32 16 14 H 0.05 1.64 7.99 -52.48 -0.42 1.22 16 15 C 0.04 1.19 5.08 -17.82 -0.09 1.10 16 16 N -0.90 -27.60 13.70 55.43 0.76 -26.85 16 17 Si 1.05 26.32 23.31 -169.99 -3.96 22.36 16 18 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 19 H -0.28 -6.44 5.63 56.52 0.32 -6.12 16 20 H -0.29 -6.93 6.80 56.52 0.38 -6.54 16 21 H 0.05 0.53 7.94 -51.93 -0.41 0.12 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.98 7.83 -51.92 -0.41 0.58 16 28 H 0.34 5.61 6.42 -39.29 -0.25 5.36 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 1.27 4.43 -51.92 -0.23 1.04 16 32 H 0.03 0.50 6.95 -51.93 -0.36 0.14 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.04 0.92 7.38 -51.93 -0.38 0.53 16 36 H 0.03 0.68 2.90 -51.93 -0.15 0.53 16 37 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 LS Contribution 278.37 15.07 4.20 4.20 Total: -1.00 -28.97 278.37 -6.69 -35.66 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.49 Total: 2.17 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -0.58 Total: -25.34 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.16 Total: -39.04 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -3.96 Total: 22.36 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.97 -6.69 -35.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.730 kcal (2) G-P(sol) polarization free energy of solvation -28.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds