Wall clock time and date at job start Sun Mar 29 2020 21:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 112.85369 * 2 1 4 4 C 1.53787 * 113.61077 * 131.30514 * 2 1 3 5 5 C 1.53951 * 87.11072 * 139.90762 * 4 2 1 6 6 C 1.53777 * 87.02147 * 334.63749 * 5 4 2 7 7 H 1.08997 * 113.61665 * 270.76832 * 6 5 4 8 8 N 1.46901 * 113.61684 * 139.94898 * 6 5 4 9 9 C 1.46904 * 111.00220 * 105.86084 * 8 6 5 10 10 C 1.52992 * 109.47370 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47114 * 60.00262 * 10 9 8 12 12 C 1.53006 * 109.47272 * 300.00398 * 10 9 8 13 13 C 1.50693 * 109.47396 * 180.02562 * 10 9 8 14 14 H 1.08004 * 119.99585 * 4.71031 * 13 10 9 15 15 C 1.37885 * 120.00437 * 184.70460 * 13 10 9 16 16 N 1.31514 * 119.99694 * 152.05942 * 15 13 10 17 17 Si 1.86796 * 119.99960 * 332.06470 * 15 13 10 18 18 H 1.48490 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.46996 * 59.99390 * 17 15 13 20 20 H 1.48502 * 109.47182 * 299.99978 * 17 15 13 21 21 H 1.09002 * 109.47493 * 191.19434 * 1 2 3 22 22 H 1.09001 * 109.47558 * 311.19993 * 1 2 3 23 23 H 1.09004 * 109.47050 * 71.19867 * 1 2 3 24 24 H 1.08996 * 113.61626 * 254.53162 * 4 2 1 25 25 H 1.09006 * 113.61475 * 25.34952 * 4 2 1 26 26 H 1.09004 * 113.66879 * 220.10996 * 5 4 2 27 27 H 1.09009 * 113.61260 * 89.16009 * 5 4 2 28 28 H 1.00906 * 110.99966 * 341.90925 * 8 6 5 29 29 H 1.09002 * 109.46644 * 60.00296 * 9 8 6 30 30 H 1.09001 * 109.47282 * 300.00730 * 9 8 6 31 31 H 1.09007 * 109.47131 * 172.80654 * 11 10 9 32 32 H 1.09004 * 109.47128 * 292.80638 * 11 10 9 33 33 H 1.08996 * 109.47357 * 52.80586 * 11 10 9 34 34 H 1.08997 * 109.46778 * 292.23833 * 12 10 9 35 35 H 1.09004 * 109.47153 * 52.23599 * 12 10 9 36 36 H 1.08998 * 109.47063 * 172.23421 * 12 10 9 37 37 H 0.96999 * 120.00485 * 354.89240 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9533 1.0044 0.0000 4 6 2.1459 -0.9301 1.0585 5 6 3.1926 -1.3161 -0.0024 6 6 2.1460 -0.9282 -1.0601 7 1 1.4939 -1.7515 -1.3516 8 7 2.7107 -0.2125 -2.2120 9 6 2.7694 -1.0818 -3.3948 10 6 3.3622 -0.3033 -4.5710 11 6 4.7737 0.1658 -4.2124 12 6 2.4825 0.9114 -4.8739 13 6 3.4218 -1.1949 -5.7844 14 1 3.0026 -2.1895 -5.7448 15 6 4.0113 -0.7409 -6.9453 16 7 4.5603 -1.5947 -7.7814 17 14 4.0303 1.0869 -7.3302 18 1 4.7188 1.3127 -8.6263 19 1 4.7521 1.8119 -6.2538 20 1 2.6354 1.5892 -7.4160 21 1 -0.3634 -1.0081 0.1995 22 1 -0.3634 0.6769 0.7732 23 1 -0.3633 0.3312 -0.9729 24 1 2.5649 -0.4008 1.9143 25 1 1.4938 -1.7541 1.3484 26 1 3.4430 -2.3770 -0.0044 27 1 4.0725 -0.6725 -0.0021 28 1 3.6216 0.1627 -1.9935 29 1 1.7639 -1.4163 -3.6500 30 1 3.3964 -1.9469 -3.1792 31 1 5.2438 0.6078 -5.0910 32 1 4.7184 0.9093 -3.4172 33 1 5.3644 -0.6852 -3.8737 34 1 1.5207 0.5758 -5.2613 35 1 2.3262 1.4838 -3.9595 36 1 2.9742 1.5399 -5.6164 37 1 4.6167 -2.5344 -7.5477 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162868.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:01 Heat of formation + Delta-G solvation = -6.687645 kcal Electronic energy + Delta-G solvation = -14697.239940 eV Core-core repulsion = 12474.062927 eV Total energy + Delta-G solvation = -2223.177013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34599 -38.27894 -34.66737 -32.87896 -30.49852 -27.92387 -27.01707 -26.31745 -24.17258 -23.61462 -20.96926 -20.17390 -18.73320 -17.03784 -16.33329 -16.24584 -15.26987 -15.21979 -14.61967 -14.38073 -14.11949 -14.05495 -13.92992 -13.52403 -13.45721 -12.86998 -12.53141 -12.40736 -12.22945 -11.96692 -11.83073 -11.66119 -11.61690 -11.14355 -11.07119 -10.89628 -10.53490 -10.25230 -9.13275 -8.72368 -6.28273 1.44828 1.51760 1.74839 2.49170 3.00356 3.36395 3.69648 3.84451 3.94312 4.07687 4.26881 4.42535 4.58424 4.61409 4.66671 4.72514 4.83078 4.89645 4.92562 4.93724 4.98691 5.04079 5.10737 5.14337 5.18439 5.25270 5.33569 5.47705 5.57861 5.62659 5.86579 6.05499 6.17601 6.31267 6.60432 6.66143 7.43117 8.61605 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.052414 B = 0.007546 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.075835 B = 3709.515806 C = 3865.220971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.098 4.098 3 H 0.091 0.909 4 C -0.124 4.124 5 C -0.171 4.171 6 C 0.057 3.943 7 H 0.079 0.921 8 N -0.674 5.674 9 C 0.101 3.899 10 C 0.038 3.962 11 C -0.138 4.138 12 C -0.134 4.134 13 C -0.610 4.610 14 H 0.014 0.986 15 C -0.006 4.006 16 N -0.930 5.930 17 Si 1.087 2.913 18 H -0.310 1.310 19 H -0.242 1.242 20 H -0.271 1.271 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.343 0.657 29 H 0.044 0.956 30 H 0.001 0.999 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 5.287 17.262 18.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.210 4.210 6 C -0.053 4.053 7 H 0.098 0.902 8 N -0.305 5.305 9 C -0.028 4.028 10 C 0.037 3.963 11 C -0.196 4.196 12 C -0.191 4.191 13 C -0.648 4.648 14 H 0.032 0.968 15 C -0.206 4.206 16 N -0.565 5.565 17 Si 0.914 3.086 18 H -0.239 1.239 19 H -0.168 1.168 20 H -0.198 1.198 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.099 0.901 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.163 0.837 29 H 0.062 0.938 30 H 0.019 0.981 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.596 6.642 15.934 17.864 hybrid contribution 0.327 -2.579 0.712 2.695 sum -4.270 4.063 16.646 17.659 Atomic orbital electron populations 1.21664 0.94529 1.01753 1.01473 1.22650 0.95932 0.98706 0.94470 0.89121 1.22821 0.97514 0.99427 0.96374 1.23639 0.97996 1.01306 0.98050 1.23279 0.97075 0.96156 0.88803 0.90241 1.60500 1.29909 1.36168 1.03876 1.21597 0.97998 0.93033 0.90215 1.18413 0.92358 0.93226 0.92352 1.22118 0.97834 0.99372 1.00240 1.22082 0.98830 0.97962 1.00190 1.22051 1.42410 1.00502 0.99793 0.96779 1.26965 0.91183 1.09187 0.93287 1.70972 1.39053 1.04681 1.41773 0.83796 0.77498 0.72205 0.75141 1.23933 1.16775 1.19785 0.92661 0.91565 0.93618 0.90117 0.89613 0.92201 0.89791 0.83735 0.93769 0.98052 0.94204 0.91902 0.95020 0.94767 0.91022 0.95257 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.71 71.98 0.70 -2.05 16 2 C -0.10 -2.12 4.16 -10.27 -0.04 -2.17 16 3 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.12 -2.26 7.64 31.18 0.24 -2.02 16 5 C -0.17 -3.85 7.72 31.18 0.24 -3.61 16 6 C 0.06 1.54 3.72 45.44 0.17 1.71 16 7 H 0.08 2.31 7.84 -2.39 -0.02 2.29 16 8 N -0.67 -21.65 5.70 -488.86 -2.79 -24.43 16 9 C 0.10 4.12 4.44 86.30 0.38 4.50 16 10 C 0.04 1.74 0.57 -52.93 -0.03 1.71 16 11 C -0.14 -5.84 7.62 71.98 0.55 -5.29 16 12 C -0.13 -5.70 7.46 71.98 0.54 -5.16 16 13 C -0.61 -35.02 8.42 25.60 0.22 -34.81 16 14 H 0.01 0.89 7.99 -2.91 -0.02 0.86 16 15 C -0.01 -0.38 5.08 84.66 0.43 0.05 16 16 N -0.93 -59.09 13.70 21.45 0.29 -58.80 16 17 Si 1.09 52.09 23.31 68.60 1.60 53.69 16 18 H -0.31 -15.24 7.11 99.48 0.71 -14.54 16 19 H -0.24 -10.25 5.63 99.48 0.56 -9.69 16 20 H -0.27 -12.20 6.80 99.48 0.68 -11.52 16 21 H 0.05 1.04 7.94 -2.39 -0.02 1.02 16 22 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.09 1.44 7.96 -2.38 -0.02 1.43 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.83 7.83 -2.38 -0.02 1.81 16 28 H 0.34 10.37 6.42 -89.69 -0.58 9.80 16 29 H 0.04 1.91 8.13 -2.39 -0.02 1.89 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.04 1.78 4.43 -2.38 -0.01 1.77 16 32 H 0.06 2.18 6.95 -2.38 -0.02 2.17 16 33 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 35 H 0.07 2.66 7.38 -2.39 -0.02 2.64 16 36 H 0.03 1.24 2.90 -2.39 -0.01 1.24 16 37 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 Total: -1.00 -63.22 278.37 2.73 -60.50 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.23 Total: 16.18 kcal Atomic # 6 Polarization: -50.52 SS G_CDS: 3.39 Total: -47.13 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -2.49 Total: -83.23 kcal Atomic # 14 Polarization: 52.09 SS G_CDS: 1.60 Total: 53.69 kcal Total: -63.22 2.73 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162868.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.809 kcal (2) G-P(sol) polarization free energy of solvation -63.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds