Wall clock time and date at job start Sun Mar 29 2020 21:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 112.84675 * 2 1 4 4 C 1.53779 * 113.61583 * 131.31190 * 2 1 3 5 5 C 1.53778 * 87.08195 * 89.11737 * 4 2 1 6 6 C 1.53778 * 87.08543 * 25.43120 * 5 4 2 7 7 H 1.09000 * 113.68702 * 89.12710 * 6 5 4 8 8 N 1.46898 * 113.61495 * 220.02352 * 6 5 4 9 9 C 1.46906 * 110.99888 * 252.49684 * 8 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47317 * 60.00033 * 10 9 8 12 12 C 1.52992 * 109.46961 * 299.99572 * 10 9 8 13 13 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 H 1.09007 * 109.46998 * 191.19548 * 1 2 3 22 22 H 1.08997 * 109.47429 * 311.18990 * 1 2 3 23 23 H 1.09000 * 109.47838 * 71.19461 * 1 2 3 24 24 H 1.09005 * 113.60964 * 203.66537 * 4 2 1 25 25 H 1.08993 * 113.61738 * 334.56288 * 4 2 1 26 26 H 1.09005 * 113.60888 * 270.88070 * 5 4 2 27 27 H 1.09004 * 113.61437 * 139.98186 * 5 4 2 28 28 H 1.00901 * 111.00121 * 128.54271 * 8 6 5 29 29 H 1.09000 * 109.47033 * 59.99886 * 9 8 6 30 30 H 1.09001 * 109.46544 * 299.99942 * 9 8 6 31 31 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 32 32 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47261 * 59.99813 * 11 10 9 34 34 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 36 36 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 37 37 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1460 -0.9302 1.0583 5 6 2.0930 -2.0425 -0.0022 6 6 2.1459 -0.9280 -1.0604 7 1 3.1585 -0.6477 -1.3508 8 7 1.2678 -1.1689 -2.2131 9 6 2.0494 -1.5252 -3.4049 10 6 1.1025 -1.7673 -4.5821 11 6 0.2993 -0.4952 -4.8605 12 6 0.1451 -2.9104 -4.2396 13 6 1.9044 -2.1322 -5.8048 14 1 2.9816 -2.1856 -5.7480 15 6 1.2627 -2.3978 -6.9959 16 7 -0.0490 -2.3322 -7.0651 17 14 2.2566 -2.8508 -8.5113 18 1 2.4339 -4.3242 -8.5648 19 1 1.5390 -2.3941 -9.7287 20 1 3.5869 -2.1942 -8.4453 21 1 -0.3633 -1.0082 0.1995 22 1 -0.3634 0.6767 0.7733 23 1 -0.3635 0.3313 -0.9728 24 1 3.1591 -0.6512 1.3482 25 1 1.4946 -1.1106 1.9134 26 1 1.1568 -2.6009 -0.0026 27 1 2.9717 -2.6874 -0.0028 28 1 0.6791 -0.3693 -2.3925 29 1 2.6220 -2.4312 -3.2064 30 1 2.7312 -0.7106 -3.6491 31 1 -0.2807 -0.2308 -3.9762 32 1 -0.3749 -0.6676 -5.6994 33 1 0.9815 0.3192 -5.1045 34 1 -0.5292 -3.0832 -5.0784 35 1 0.7172 -3.8166 -4.0413 36 1 -0.4349 -2.6460 -3.3553 37 1 -0.5003 -2.5187 -7.9032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839162869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:03 Heat of formation + Delta-G solvation = 5.670239 kcal Electronic energy + Delta-G solvation = -14737.304842 eV Core-core repulsion = 12514.663707 eV Total energy + Delta-G solvation = -2222.641135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.23205 -36.21641 -32.70551 -30.28981 -29.18702 -25.52426 -25.22031 -24.74719 -23.50398 -22.54269 -18.47489 -18.12627 -15.96886 -15.79727 -15.30307 -14.44373 -14.22605 -13.41099 -12.94338 -12.56402 -12.26425 -12.11288 -12.02385 -11.80860 -11.35029 -11.10358 -10.95959 -10.68657 -10.63356 -10.43859 -10.20782 -10.07310 -10.02402 -9.84592 -9.34241 -8.93658 -8.57910 -8.26134 -7.61032 -5.88285 -3.98512 3.33066 3.39806 3.42834 4.46324 4.71631 4.77351 4.88757 5.18620 5.26945 5.37054 5.61454 5.75797 5.83296 5.86896 5.97788 6.09278 6.21422 6.37661 6.38414 6.47142 6.61807 6.68083 6.77394 6.94556 7.12403 7.21510 7.43033 7.53149 7.79171 7.82164 7.91156 8.07140 8.25833 8.39058 8.60034 9.03181 9.66323 11.12228 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058040 B = 0.007120 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.307383 B = 3931.583471 C = 4107.101356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 H 0.066 0.934 4 C -0.139 4.139 5 C -0.125 4.125 6 C 0.061 3.939 7 H 0.063 0.937 8 N -0.673 5.673 9 C 0.074 3.926 10 C 0.068 3.932 11 C -0.132 4.132 12 C -0.118 4.118 13 C -0.506 4.506 14 H 0.051 0.949 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.276 1.276 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.337 0.663 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.083 0.917 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.635 3.487 11.751 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.138 4.138 3 H 0.085 0.915 4 C -0.177 4.177 5 C -0.163 4.163 6 C -0.050 4.050 7 H 0.081 0.919 8 N -0.305 5.305 9 C -0.054 4.054 10 C 0.068 3.932 11 C -0.190 4.190 12 C -0.176 4.176 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.201 1.201 21 H 0.081 0.919 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.106 0.894 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.355 2.818 11.762 12.171 hybrid contribution 1.089 0.599 -1.159 1.699 sum 2.444 3.417 10.604 11.406 Atomic orbital electron populations 1.21442 0.93431 1.02032 1.01434 1.22621 0.96586 0.97717 0.96907 0.91534 1.22832 1.00365 0.97771 0.96773 1.22999 1.02085 0.96316 0.94920 1.23018 0.95548 0.95720 0.90686 0.91929 1.60784 1.22357 1.42350 1.05048 1.22189 0.95570 0.97822 0.89846 1.18090 0.92088 0.92698 0.90364 1.21830 0.99854 0.97266 1.00004 1.21625 0.99486 0.97224 0.99234 1.21136 0.92812 1.46337 0.94207 0.93058 1.24885 0.94828 0.95385 0.98487 1.69835 1.07117 1.49667 1.25814 0.86669 0.80215 0.78662 0.82840 1.20793 1.21331 1.20139 0.91936 0.93307 0.92046 0.90813 0.91624 0.89449 0.92450 0.84149 0.92714 0.97111 0.97112 0.89844 0.96289 0.90821 0.96376 0.96120 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.98 37.15 0.33 -1.24 16 2 C -0.12 -1.53 4.43 -89.81 -0.40 -1.93 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.14 -1.62 7.64 -25.92 -0.20 -1.82 16 5 C -0.12 -1.74 7.53 -25.92 -0.20 -1.93 16 6 C 0.06 0.94 4.03 -66.90 -0.27 0.67 16 7 H 0.06 0.99 7.87 -51.93 -0.41 0.58 16 8 N -0.67 -12.28 5.28 -105.86 -0.56 -12.84 16 9 C 0.07 1.60 4.43 -3.82 -0.02 1.58 16 10 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 11 C -0.13 -3.16 7.92 37.16 0.29 -2.87 16 12 C -0.12 -2.93 8.09 37.15 0.30 -2.63 16 13 C -0.51 -13.88 8.01 -34.44 -0.28 -14.15 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 15 C 0.06 1.78 5.15 -17.82 -0.09 1.69 16 16 N -0.89 -24.82 9.35 55.43 0.52 -24.30 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H 0.06 0.81 7.34 -51.93 -0.38 0.43 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.81 6.72 -51.93 -0.35 0.47 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.09 1.29 7.65 -51.93 -0.40 0.89 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.34 6.10 4.97 -39.29 -0.20 5.91 16 29 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.01 0.23 8.13 -51.93 -0.42 -0.19 16 31 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 32 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 2.00 6.07 -51.93 -0.32 1.68 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -27.24 282.42 -7.85 -35.09 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.44 Total: 2.49 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.61 Total: -21.03 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.04 Total: -37.14 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.24 -7.85 -35.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.760 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds