Wall clock time and date at job start Sun Mar 29 2020 21:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 112.84675 * 2 1 4 4 C 1.53779 * 113.61583 * 131.31190 * 2 1 3 5 5 C 1.53778 * 87.08195 * 89.11737 * 4 2 1 6 6 C 1.53778 * 87.08543 * 25.43120 * 5 4 2 7 7 H 1.09000 * 113.68702 * 89.12710 * 6 5 4 8 8 N 1.46898 * 113.61495 * 220.02352 * 6 5 4 9 9 C 1.46906 * 110.99888 * 252.49684 * 8 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47317 * 60.00033 * 10 9 8 12 12 C 1.52992 * 109.46961 * 299.99572 * 10 9 8 13 13 C 1.50706 * 109.46573 * 179.97438 * 10 9 8 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 H 1.09007 * 109.46998 * 191.19548 * 1 2 3 22 22 H 1.08997 * 109.47429 * 311.18990 * 1 2 3 23 23 H 1.09000 * 109.47838 * 71.19461 * 1 2 3 24 24 H 1.09005 * 113.60964 * 203.66537 * 4 2 1 25 25 H 1.08993 * 113.61738 * 334.56288 * 4 2 1 26 26 H 1.09005 * 113.60888 * 270.88070 * 5 4 2 27 27 H 1.09004 * 113.61437 * 139.98186 * 5 4 2 28 28 H 1.00901 * 111.00121 * 128.54271 * 8 6 5 29 29 H 1.09000 * 109.47033 * 59.99886 * 9 8 6 30 30 H 1.09001 * 109.46544 * 299.99942 * 9 8 6 31 31 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 32 32 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 33 33 H 1.09004 * 109.47261 * 59.99813 * 11 10 9 34 34 H 1.09001 * 109.47066 * 180.02562 * 12 10 9 35 35 H 1.08996 * 109.47747 * 300.00196 * 12 10 9 36 36 H 1.09002 * 109.47103 * 60.00608 * 12 10 9 37 37 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1460 -0.9302 1.0583 5 6 2.0930 -2.0425 -0.0022 6 6 2.1459 -0.9280 -1.0604 7 1 3.1585 -0.6477 -1.3508 8 7 1.2678 -1.1689 -2.2131 9 6 2.0494 -1.5252 -3.4049 10 6 1.1025 -1.7673 -4.5821 11 6 0.2993 -0.4952 -4.8605 12 6 0.1451 -2.9104 -4.2396 13 6 1.9044 -2.1322 -5.8048 14 1 2.9816 -2.1856 -5.7480 15 6 1.2627 -2.3978 -6.9959 16 7 -0.0490 -2.3322 -7.0651 17 14 2.2566 -2.8508 -8.5113 18 1 2.4339 -4.3242 -8.5648 19 1 1.5390 -2.3941 -9.7287 20 1 3.5869 -2.1942 -8.4453 21 1 -0.3633 -1.0082 0.1995 22 1 -0.3634 0.6767 0.7733 23 1 -0.3635 0.3313 -0.9728 24 1 3.1591 -0.6512 1.3482 25 1 1.4946 -1.1106 1.9134 26 1 1.1568 -2.6009 -0.0026 27 1 2.9717 -2.6874 -0.0028 28 1 0.6791 -0.3693 -2.3925 29 1 2.6220 -2.4312 -3.2064 30 1 2.7312 -0.7106 -3.6491 31 1 -0.2807 -0.2308 -3.9762 32 1 -0.3749 -0.6676 -5.6994 33 1 0.9815 0.3192 -5.1045 34 1 -0.5292 -3.0832 -5.0784 35 1 0.7172 -3.8166 -4.0413 36 1 -0.4349 -2.6460 -3.3553 37 1 -0.5003 -2.5187 -7.9032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839162869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:02 Heat of formation + Delta-G solvation = -8.937984 kcal Electronic energy + Delta-G solvation = -14737.938302 eV Core-core repulsion = 12514.663707 eV Total energy + Delta-G solvation = -2223.274595 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39653 -38.02902 -34.50353 -32.12314 -30.19879 -27.50415 -27.26102 -26.33904 -24.54563 -23.94043 -20.34890 -19.32485 -17.84677 -17.02618 -16.91047 -16.22886 -15.65662 -14.90241 -14.71044 -14.16169 -13.82467 -13.39652 -13.17926 -13.11606 -13.03797 -12.96109 -12.55792 -12.46407 -12.31473 -12.10698 -12.07478 -11.62652 -11.39744 -11.26195 -10.95030 -10.67506 -10.57791 -10.34916 -9.10324 -7.97185 -6.14348 1.41525 1.43313 1.51849 2.46012 3.24569 3.49074 3.68907 3.80331 4.08130 4.10797 4.55704 4.58548 4.63649 4.71880 4.81537 4.86083 4.90805 5.03018 5.04497 5.10892 5.17817 5.18785 5.28388 5.37104 5.43941 5.52226 5.55219 5.63909 5.69565 5.77085 6.20019 6.30589 6.38614 6.51443 6.69906 6.95492 7.53253 9.01029 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058040 B = 0.007120 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.307383 B = 3931.583471 C = 4107.101356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 H 0.077 0.923 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.045 3.955 7 H 0.058 0.942 8 N -0.672 5.672 9 C 0.090 3.910 10 C 0.059 3.941 11 C -0.120 4.120 12 C -0.104 4.104 13 C -0.529 4.529 14 H 0.043 0.957 15 C 0.023 3.977 16 N -0.904 5.904 17 Si 0.945 3.055 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.274 1.274 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.338 0.662 29 H 0.043 0.957 30 H 0.004 0.996 31 H 0.033 0.967 32 H 0.056 0.944 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.008 0.992 36 H 0.034 0.966 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 4.050 13.006 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.132 4.132 3 H 0.095 0.905 4 C -0.161 4.161 5 C -0.166 4.166 6 C -0.065 4.065 7 H 0.076 0.924 8 N -0.305 5.305 9 C -0.039 4.039 10 C 0.059 3.941 11 C -0.178 4.178 12 C -0.161 4.161 13 C -0.568 4.568 14 H 0.061 0.939 15 C -0.176 4.176 16 N -0.543 5.543 17 Si 0.771 3.229 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.198 1.198 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.159 0.841 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.053 0.947 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.744 3.383 13.032 13.576 hybrid contribution 0.961 0.420 -1.521 1.848 sum 2.706 3.803 11.511 12.421 Atomic orbital electron populations 1.21440 0.93154 1.02101 1.01551 1.22619 0.96770 0.97983 0.95804 0.90474 1.22780 1.01438 0.95575 0.96324 1.22988 1.01608 0.96552 0.95420 1.23235 0.95138 0.97962 0.90160 0.92381 1.60739 1.22564 1.42695 1.04476 1.21841 0.94799 0.97134 0.90156 1.18144 0.92431 0.92737 0.90827 1.21657 0.99332 0.96871 0.99937 1.21450 0.98984 0.97011 0.98693 1.21458 0.92761 1.46832 0.95721 0.93904 1.25538 0.95758 0.95400 1.00951 1.69963 1.08121 1.49883 1.26307 0.85771 0.78984 0.78334 0.79774 1.20505 1.20888 1.19842 0.92674 0.91171 0.93166 0.89367 0.90098 0.90439 0.92444 0.84068 0.93840 0.97771 0.94780 0.92481 0.96546 0.93281 0.97298 0.94681 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.98 71.98 0.65 -2.17 16 2 C -0.11 -2.59 4.43 -10.27 -0.05 -2.64 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -2.49 7.64 31.12 0.24 -2.25 16 5 C -0.13 -3.32 7.53 31.12 0.23 -3.08 16 6 C 0.05 1.32 4.03 45.44 0.18 1.51 16 7 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 8 N -0.67 -23.89 5.28 -488.83 -2.58 -26.47 16 9 C 0.09 3.86 4.43 86.30 0.38 4.24 16 10 C 0.06 2.92 0.57 -52.93 -0.03 2.89 16 11 C -0.12 -5.74 7.92 71.98 0.57 -5.17 16 12 C -0.10 -5.16 8.09 71.98 0.58 -4.58 16 13 C -0.53 -29.23 8.01 25.60 0.21 -29.03 16 14 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 15 C 0.02 1.24 5.15 84.66 0.44 1.68 16 16 N -0.90 -51.08 9.35 21.45 0.20 -50.87 16 17 Si 0.94 43.90 29.54 68.60 2.03 45.92 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H 0.05 1.31 7.34 -2.38 -0.02 1.30 16 22 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.24 6.72 -2.39 -0.02 1.22 16 24 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 26 H 0.08 2.18 7.65 -2.38 -0.02 2.16 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.34 11.80 4.97 -89.69 -0.45 11.36 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 31 H 0.03 1.42 6.57 -2.39 -0.02 1.40 16 32 H 0.06 3.04 6.07 -2.39 -0.01 3.02 16 33 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.05 2.68 6.07 -2.39 -0.01 2.66 16 35 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.03 1.59 7.60 -2.39 -0.02 1.57 16 37 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -57.21 282.42 3.62 -53.59 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.57 Total: 16.44 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.40 Total: -38.61 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -2.38 Total: -77.34 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -57.21 3.62 -53.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839162869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.652 kcal (2) G-P(sol) polarization free energy of solvation -57.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds