Wall clock time and date at job start Sun Mar 29 2020 21:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35335 * 117.00629 * 2 1 4 4 C 1.36192 * 125.57326 * 179.97438 * 3 2 1 5 5 C 1.39805 * 107.19404 * 179.97438 * 4 3 2 6 6 C 1.38032 * 106.67107 * 359.97438 * 5 4 3 7 7 C 1.41558 * 126.04145 * 179.97438 * 6 5 4 8 8 O 1.21733 * 120.00070 * 359.97438 * 7 6 5 9 9 O 1.34965 * 119.99858 * 180.02562 * 7 6 5 10 10 C 1.34861 * 117.00124 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99564 * 0.02562 * 10 9 7 12 12 C 1.38761 * 120.00055 * 179.97438 * 10 9 7 13 13 N 1.31448 * 119.99896 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 120.00172 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47322 * 89.99795 * 14 12 10 16 16 H 1.48496 * 109.47430 * 210.00198 * 14 12 10 17 17 H 1.48499 * 109.47274 * 329.99835 * 14 12 10 18 18 O 1.34019 * 125.56573 * 359.97438 * 3 2 1 19 19 H 1.09000 * 109.47206 * 300.00251 * 1 2 3 20 20 H 1.09006 * 109.46834 * 60.00046 * 1 2 3 21 21 H 1.08998 * 109.47192 * 180.02562 * 1 2 3 22 22 H 1.07992 * 126.40157 * 0.23838 * 4 3 2 23 23 H 1.08002 * 126.66033 * 179.97438 * 5 4 3 24 24 H 0.96994 * 120.00242 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2058 0.0000 4 6 3.3902 1.4087 0.0005 5 6 3.5999 2.7909 -0.0003 6 6 2.3520 3.3807 -0.0019 7 6 2.0881 4.7715 -0.0026 8 8 3.0104 5.5660 -0.0013 9 8 0.8140 5.2166 -0.0036 10 6 0.6322 6.5529 -0.0037 11 1 1.4863 7.2140 -0.0034 12 6 -0.6520 7.0784 -0.0052 13 7 -0.8292 8.3809 -0.0059 14 14 -2.1291 5.9350 -0.0065 15 1 -2.5221 5.6324 1.3932 16 1 -3.2620 6.5904 -0.7080 17 1 -1.7776 4.6730 -0.7057 18 8 1.4262 2.3953 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 4.1534 0.6446 -0.0027 23 1 4.5533 3.2985 0.0002 24 1 -1.7268 8.7483 -0.0066 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848853310.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:40 Heat of formation + Delta-G solvation = -94.954990 kcal Electronic energy + Delta-G solvation = -13667.056880 eV Core-core repulsion = 10934.834362 eV Total energy + Delta-G solvation = -2732.222518 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.50455 -39.19029 -38.39743 -35.54031 -32.95345 -32.41652 -29.69603 -27.48144 -25.51048 -22.70193 -21.75189 -19.99191 -18.62227 -18.05898 -17.32389 -16.91836 -15.53476 -15.19451 -15.18001 -14.23307 -14.05248 -13.20560 -13.04320 -12.77310 -12.39229 -12.25423 -12.13774 -11.62056 -11.35098 -10.61439 -10.49148 -9.81074 -9.80528 -9.51791 -8.77680 -7.90858 -6.48693 -4.18624 1.30104 2.44197 2.53930 3.15537 3.18764 3.28287 3.33913 3.81175 4.15794 4.25159 4.95599 5.00571 5.04228 5.04331 5.31454 5.59723 5.76083 5.95104 6.17617 6.50622 6.82556 7.25557 7.58257 7.93280 8.48426 8.88185 9.54543 10.58558 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.010132 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.625825 B = 2762.840546 C = 3547.322630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.266 6.266 3 C 0.196 3.804 4 C -0.238 4.238 5 C -0.101 4.101 6 C -0.041 4.041 7 C 0.482 3.518 8 O -0.522 6.522 9 O -0.238 6.238 10 C -0.373 4.373 11 H 0.115 0.885 12 C 0.067 3.933 13 N -0.863 5.863 14 Si 0.905 3.095 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.259 1.259 18 O -0.179 6.179 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.108 0.892 22 H 0.161 0.839 23 H 0.167 0.833 24 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.264 -15.606 -0.010 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.181 6.181 3 C 0.099 3.901 4 C -0.257 4.257 5 C -0.121 4.121 6 C -0.090 4.090 7 C 0.331 3.669 8 O -0.420 6.420 9 O -0.146 6.146 10 C -0.448 4.448 11 H 0.132 0.868 12 C -0.138 4.138 13 N -0.501 5.501 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.183 1.183 18 O -0.078 6.078 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.126 0.874 22 H 0.179 0.821 23 H 0.185 0.815 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.075 -15.344 -0.014 15.382 hybrid contribution -0.941 -0.329 0.014 0.997 sum 0.134 -15.674 0.000 15.674 Atomic orbital electron populations 1.23148 0.76830 1.04487 1.03075 1.86333 1.22999 1.19212 1.89510 1.20803 0.89593 0.78484 1.01189 1.20673 0.91819 0.96710 1.16538 1.21896 0.97529 0.92300 1.00352 1.20195 0.86647 0.85886 1.16263 1.17389 0.82998 0.85080 0.81440 1.90809 1.45273 1.54248 1.51625 1.83674 1.27199 1.27780 1.75914 1.20772 0.96177 0.77093 1.50774 0.86772 1.24581 0.97991 0.95911 0.95357 1.69601 1.24017 1.10475 1.46021 0.86207 0.80559 0.81129 0.79133 1.19654 1.20486 1.18272 1.84117 1.37587 1.13959 1.72170 0.91736 0.91728 0.87418 0.82148 0.81521 0.90733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.74 101.05 1.08 1.28 14 2 O -0.27 -3.56 10.55 -40.93 -0.43 -3.99 14 3 C 0.20 3.12 7.86 30.00 0.24 3.36 14 4 C -0.24 -3.48 10.89 -39.73 -0.43 -3.92 14 5 C -0.10 -1.71 10.59 -39.07 -0.41 -2.13 14 6 C -0.04 -0.86 7.00 -38.39 -0.27 -1.13 14 7 C 0.48 12.23 7.68 32.00 0.25 12.47 14 8 O -0.52 -14.23 16.04 -19.45 -0.31 -14.54 14 9 O -0.24 -6.58 8.56 -25.08 -0.21 -6.80 14 10 C -0.37 -11.19 10.11 30.93 0.31 -10.87 14 11 H 0.11 3.71 7.09 -52.49 -0.37 3.34 14 12 C 0.07 1.91 5.49 -17.52 -0.10 1.81 14 13 N -0.86 -25.24 13.96 55.48 0.77 -24.46 14 14 Si 0.90 21.47 28.62 -169.99 -4.86 16.61 14 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 17 H -0.26 -6.11 7.11 56.52 0.40 -5.71 14 18 O -0.18 -3.45 10.14 -22.48 -0.23 -3.68 14 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 14 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 14 21 H 0.11 0.73 8.14 -51.93 -0.42 0.31 14 22 H 0.16 1.81 8.06 -52.49 -0.42 1.39 14 23 H 0.17 2.52 8.06 -52.49 -0.42 2.10 14 24 H 0.28 7.49 8.31 -40.82 -0.34 7.16 14 LS Contribution 235.47 15.07 3.55 3.55 Total: -1.00 -32.42 235.47 -2.68 -35.10 By element: Atomic # 1 Polarization: -1.05 SS G_CDS: -1.62 Total: -2.67 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 0.67 Total: 0.88 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.77 Total: -24.46 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.19 Total: -29.01 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.86 Total: 16.61 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -32.42 -2.68 -35.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848853310.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.851 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds