Wall clock time and date at job start Sun Mar 29 2020 21:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27645 * 125.76683 * 2 1 4 4 O 1.41381 * 113.17219 * 180.31836 * 3 2 1 5 5 C 1.44252 * 107.50489 * 342.63112 * 4 3 2 6 6 H 1.08995 * 111.01111 * 143.21388 * 5 4 3 7 7 C 1.53004 * 111.01056 * 267.04271 * 5 4 3 8 8 N 1.46505 * 109.46888 * 295.40241 * 7 5 4 9 9 C 1.34776 * 119.99786 * 179.72395 * 8 7 5 10 10 O 1.21690 * 120.00086 * 0.02562 * 9 8 7 11 11 C 1.46375 * 120.00255 * 179.97438 * 9 8 7 12 12 H 1.08005 * 119.99269 * 353.93918 * 11 9 8 13 13 C 1.40043 * 120.00154 * 173.94328 * 11 9 8 14 14 N 1.30671 * 120.00348 * 6.14486 * 13 11 9 15 15 Si 1.86805 * 119.99854 * 186.15308 * 13 11 9 16 16 H 1.48497 * 109.47156 * 94.98073 * 15 13 11 17 17 H 1.48497 * 109.46816 * 214.98151 * 15 13 11 18 18 H 1.48499 * 109.47027 * 334.97749 * 15 13 11 19 19 C 1.51788 * 125.76566 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47274 * 359.97383 * 1 2 3 21 21 H 1.09004 * 109.46923 * 119.97523 * 1 2 3 22 22 H 1.08997 * 109.46951 * 239.97331 * 1 2 3 23 23 H 1.09002 * 109.47080 * 175.40253 * 7 5 4 24 24 H 1.09001 * 109.47127 * 55.39497 * 7 5 4 25 25 H 0.96999 * 120.00156 * 359.97438 * 8 7 5 26 26 H 0.97001 * 120.00188 * 180.02562 * 14 13 11 27 27 H 1.09000 * 110.81974 * 77.05439 * 19 2 1 28 28 H 1.09003 * 110.83532 * 313.51827 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 -0.0072 5 6 3.7718 -0.6499 0.3984 6 1 4.5763 -1.1396 -0.1503 7 6 3.9968 -0.7572 1.9080 8 7 5.2737 -0.1295 2.2571 9 6 5.6809 -0.0995 3.5416 10 8 4.9881 -0.5942 4.4112 11 6 6.9569 0.5270 3.8905 12 1 7.6172 0.8776 3.1111 13 6 7.3215 0.6718 5.2349 14 7 6.5821 0.1421 6.1731 15 14 8.8646 1.6225 5.6870 16 1 8.5055 3.0290 6.0003 17 1 9.5008 0.9977 6.8744 18 1 9.8142 1.5966 4.5455 19 6 2.3941 -1.2316 -0.0006 20 1 -0.3633 1.0276 0.0005 21 1 -0.3633 -0.5135 -0.8902 22 1 -0.3633 -0.5142 0.8897 23 1 4.0168 -1.8076 2.1986 24 1 3.1873 -0.2501 2.4329 25 1 5.8244 0.2676 1.5644 26 1 6.8345 0.2427 7.1043 27 1 2.4354 -1.6789 -0.9937 28 1 2.0515 -1.9566 0.7379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854801071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:56 Heat of formation + Delta-G solvation = -26.742605 kcal Electronic energy + Delta-G solvation = -13740.853341 eV Core-core repulsion = 11179.714580 eV Total energy + Delta-G solvation = -2561.138761 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.15005 -37.13643 -34.05991 -33.21475 -32.29366 -30.55058 -28.44892 -26.95898 -24.98913 -21.62057 -19.95114 -19.36323 -17.27653 -16.58956 -15.56641 -15.30290 -15.01654 -14.16906 -14.02770 -13.61486 -13.13741 -12.99329 -12.72757 -12.39031 -12.17638 -11.64869 -11.46361 -11.17962 -11.06179 -10.88973 -10.51567 -10.40965 -10.18877 -9.24928 -8.81898 -7.60563 -7.50065 -6.16875 -4.60205 1.89935 3.17186 3.21517 3.24281 3.28035 4.07586 4.15063 4.47667 4.55231 4.62775 4.82475 5.16531 5.25547 5.30044 5.35899 5.45692 5.51485 5.70888 5.81385 6.06324 6.30166 6.41194 7.47119 7.53986 7.96254 8.10045 8.36551 9.05720 9.55707 10.62289 10.80456 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.063184 B = 0.006374 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.044112 B = 4392.001850 C = 4524.043433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.072 3.928 3 N -0.290 5.290 4 O -0.189 6.189 5 C 0.031 3.969 6 H 0.116 0.884 7 C 0.124 3.876 8 N -0.762 5.762 9 C 0.555 3.445 10 O -0.584 6.584 11 C -0.544 4.544 12 H 0.069 0.931 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.145 4.145 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.384 0.616 26 H 0.268 0.732 27 H 0.101 0.899 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 -2.752 -11.988 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 N -0.032 5.032 4 O -0.208 6.208 5 C -0.028 4.028 6 H 0.134 0.866 7 C -0.002 4.002 8 N -0.417 5.417 9 C 0.359 3.641 10 O -0.467 6.467 11 C -0.581 4.581 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.734 3.266 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.185 4.185 20 H 0.099 0.901 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.216 0.784 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.613 -1.954 -11.188 14.254 hybrid contribution 1.102 -0.336 -0.044 1.153 sum -7.512 -2.290 -11.231 13.704 Atomic orbital electron populations 1.20387 0.85634 1.04433 1.03763 1.26257 0.98037 0.92439 0.95424 1.77838 0.89847 1.23530 1.11989 1.91291 1.15033 1.27589 1.86901 1.24067 0.97674 0.83654 0.97402 0.86603 1.21212 0.89938 0.98443 0.90632 1.46009 1.20754 1.64590 1.10396 1.18241 0.87040 0.79519 0.79272 1.90586 1.58247 1.50467 1.47415 1.20883 1.03168 1.41584 0.92495 0.91307 1.25714 0.97279 0.94055 0.96189 1.70032 1.35293 1.33963 1.00500 0.86341 0.81770 0.79971 0.78564 1.19777 1.20476 1.18855 1.23114 0.92283 0.98715 1.04427 0.90125 0.89563 0.89365 0.92026 0.93165 0.78448 0.92155 0.88113 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.01 0.38 -0.30 15 2 C 0.07 0.90 7.45 -78.52 -0.58 0.31 15 3 N -0.29 -4.84 12.45 35.67 0.44 -4.39 15 4 O -0.19 -3.44 12.22 -11.36 -0.14 -3.58 15 5 C 0.03 0.47 3.86 -25.79 -0.10 0.37 15 6 H 0.12 1.53 8.14 -51.93 -0.42 1.11 15 7 C 0.12 2.47 5.38 -4.04 -0.02 2.45 15 8 N -0.76 -18.16 5.52 -61.71 -0.34 -18.50 15 9 C 0.56 16.51 7.74 -12.99 -0.10 16.41 15 10 O -0.58 -19.54 15.05 5.20 0.08 -19.47 15 11 C -0.54 -15.99 9.53 -35.63 -0.34 -16.33 15 12 H 0.07 1.86 7.86 -52.48 -0.41 1.45 15 13 C 0.09 2.51 5.49 -17.37 -0.10 2.41 15 14 N -0.77 -23.66 11.85 55.55 0.66 -23.00 15 15 Si 0.91 20.74 29.56 -169.99 -5.03 15.71 15 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 18 H -0.26 -5.82 7.11 56.52 0.40 -5.42 15 19 C -0.15 -1.63 6.63 -26.41 -0.18 -1.81 15 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.09 0.47 8.14 -51.93 -0.42 0.04 15 22 H 0.09 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 24 H 0.05 1.12 8.14 -51.93 -0.42 0.69 15 25 H 0.38 8.30 8.45 -40.82 -0.35 7.96 15 26 H 0.27 7.44 8.29 -40.82 -0.34 7.10 15 27 H 0.10 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.10 1.02 7.92 -51.93 -0.41 0.61 15 LS Contribution 254.07 15.07 3.83 3.83 Total: -1.00 -37.39 254.07 -4.80 -42.18 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.26 Total: 3.68 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -1.04 Total: 3.53 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.76 Total: -45.89 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.04 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -37.39 -4.80 -42.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854801071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.439 kcal (2) G-P(sol) polarization free energy of solvation -37.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds