Wall clock time and date at job start Sun Mar 29 2020 21:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27645 * 125.76683 * 2 1 4 4 O 1.41381 * 113.17219 * 180.31836 * 3 2 1 5 5 C 1.44252 * 107.50489 * 342.63112 * 4 3 2 6 6 H 1.08995 * 111.01111 * 143.21388 * 5 4 3 7 7 C 1.53004 * 111.01056 * 267.04271 * 5 4 3 8 8 N 1.46505 * 109.46888 * 295.40241 * 7 5 4 9 9 C 1.34776 * 119.99786 * 179.72395 * 8 7 5 10 10 O 1.21690 * 120.00086 * 0.02562 * 9 8 7 11 11 C 1.46375 * 120.00255 * 179.97438 * 9 8 7 12 12 H 1.08005 * 119.99269 * 353.93918 * 11 9 8 13 13 C 1.40043 * 120.00154 * 173.94328 * 11 9 8 14 14 N 1.30671 * 120.00348 * 6.14486 * 13 11 9 15 15 Si 1.86805 * 119.99854 * 186.15308 * 13 11 9 16 16 H 1.48497 * 109.47156 * 94.98073 * 15 13 11 17 17 H 1.48497 * 109.46816 * 214.98151 * 15 13 11 18 18 H 1.48499 * 109.47027 * 334.97749 * 15 13 11 19 19 C 1.51788 * 125.76566 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47274 * 359.97383 * 1 2 3 21 21 H 1.09004 * 109.46923 * 119.97523 * 1 2 3 22 22 H 1.08997 * 109.46951 * 239.97331 * 1 2 3 23 23 H 1.09002 * 109.47080 * 175.40253 * 7 5 4 24 24 H 1.09001 * 109.47127 * 55.39497 * 7 5 4 25 25 H 0.96999 * 120.00156 * 359.97438 * 8 7 5 26 26 H 0.97001 * 120.00188 * 180.02562 * 14 13 11 27 27 H 1.09000 * 110.81974 * 77.05439 * 19 2 1 28 28 H 1.09003 * 110.83532 * 313.51827 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6328 0.7274 -0.0072 5 6 3.7718 -0.6499 0.3984 6 1 4.5763 -1.1396 -0.1503 7 6 3.9968 -0.7572 1.9080 8 7 5.2737 -0.1295 2.2571 9 6 5.6809 -0.0995 3.5416 10 8 4.9881 -0.5942 4.4112 11 6 6.9569 0.5270 3.8905 12 1 7.6172 0.8776 3.1111 13 6 7.3215 0.6718 5.2349 14 7 6.5821 0.1421 6.1731 15 14 8.8646 1.6225 5.6870 16 1 8.5055 3.0290 6.0003 17 1 9.5008 0.9977 6.8744 18 1 9.8142 1.5966 4.5455 19 6 2.3941 -1.2316 -0.0006 20 1 -0.3633 1.0276 0.0005 21 1 -0.3633 -0.5135 -0.8902 22 1 -0.3633 -0.5142 0.8897 23 1 4.0168 -1.8076 2.1986 24 1 3.1873 -0.2501 2.4329 25 1 5.8244 0.2676 1.5644 26 1 6.8345 0.2427 7.1043 27 1 2.4354 -1.6789 -0.9937 28 1 2.0515 -1.9566 0.7379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854801071.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:56 Heat of formation + Delta-G solvation = -56.910449 kcal Electronic energy + Delta-G solvation = -13742.161517 eV Core-core repulsion = 11179.714580 eV Total energy + Delta-G solvation = -2562.446937 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30546 -39.28929 -35.61566 -34.72986 -34.38245 -32.00878 -29.28015 -28.90111 -26.70718 -22.91754 -21.89046 -20.60209 -19.32330 -17.76111 -17.52766 -16.83643 -16.22798 -16.04098 -15.58502 -15.12941 -14.42446 -14.39450 -13.78003 -13.67579 -13.44417 -13.24799 -13.12676 -12.77103 -12.68418 -12.50750 -12.35601 -12.01476 -11.55064 -10.96637 -10.43163 -9.94047 -9.57997 -8.34410 -6.89861 0.92384 1.38015 1.39806 1.55938 2.11925 2.24032 2.42162 2.96759 3.22200 3.47882 3.59617 3.66558 3.73893 4.08539 4.48613 4.56378 4.62871 4.71750 4.79069 4.85209 4.93449 5.28523 5.31946 5.82002 6.12936 6.20795 6.49323 6.82317 7.45796 8.42007 8.62054 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.063184 B = 0.006374 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.044112 B = 4392.001850 C = 4524.043433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.091 3.909 3 N -0.346 5.346 4 O -0.227 6.227 5 C 0.033 3.967 6 H 0.139 0.861 7 C 0.124 3.876 8 N -0.752 5.752 9 C 0.536 3.464 10 O -0.634 6.634 11 C -0.575 4.575 12 H 0.086 0.914 13 C 0.027 3.973 14 N -0.821 5.821 15 Si 1.002 2.998 16 H -0.264 1.264 17 H -0.268 1.268 18 H -0.248 1.248 19 C -0.137 4.137 20 H 0.076 0.924 21 H 0.122 0.878 22 H 0.105 0.895 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.395 0.605 26 H 0.276 0.724 27 H 0.141 0.859 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.136 -3.013 -13.324 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 N -0.092 5.092 4 O -0.242 6.242 5 C -0.026 4.026 6 H 0.157 0.843 7 C -0.001 4.001 8 N -0.407 5.407 9 C 0.341 3.659 10 O -0.521 6.521 11 C -0.612 4.612 12 H 0.104 0.896 13 C -0.188 4.188 14 N -0.450 5.450 15 Si 0.820 3.180 16 H -0.189 1.189 17 H -0.193 1.193 18 H -0.171 1.171 19 C -0.177 4.177 20 H 0.095 0.905 21 H 0.141 0.859 22 H 0.123 0.877 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.228 0.772 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.440 -2.220 -12.592 15.321 hybrid contribution 0.909 -0.322 0.332 1.020 sum -7.531 -2.543 -12.261 14.612 Atomic orbital electron populations 1.20661 0.82334 1.05070 1.06229 1.27146 0.99894 0.92073 0.91076 1.77876 0.89303 1.25439 1.16585 1.91250 1.16905 1.28844 1.87221 1.24091 1.01087 0.83721 0.93706 0.84328 1.21365 0.86937 0.97459 0.94349 1.45720 1.22107 1.63889 1.08958 1.18652 0.87403 0.79318 0.80565 1.90533 1.59629 1.52639 1.49345 1.21433 1.03708 1.42098 0.93934 0.89568 1.27024 1.01510 0.94641 0.95603 1.70184 1.38002 1.35482 1.01367 0.84956 0.76241 0.77919 0.78835 1.18917 1.19282 1.17109 1.23204 0.89124 0.98331 1.07019 0.90527 0.85948 0.87651 0.91891 0.96146 0.77191 0.91416 0.84152 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.49 71.24 0.75 -0.35 15 2 C 0.09 2.08 7.45 46.93 0.35 2.43 15 3 N -0.35 -11.45 12.45 -40.54 -0.50 -11.95 15 4 O -0.23 -8.25 12.22 -38.30 -0.47 -8.72 15 5 C 0.03 0.96 3.86 31.20 0.12 1.08 15 6 H 0.14 3.39 8.14 -2.39 -0.02 3.37 15 7 C 0.12 5.04 5.38 86.38 0.46 5.50 15 8 N -0.75 -36.71 5.52 -467.38 -2.58 -39.30 15 9 C 0.54 32.91 7.74 86.36 0.67 33.58 15 10 O -0.63 -44.21 15.05 -4.32 -0.06 -44.27 15 11 C -0.58 -34.26 9.53 24.83 0.24 -34.02 15 12 H 0.09 4.65 7.86 -2.91 -0.02 4.62 15 13 C 0.03 1.58 5.49 85.30 0.47 2.05 15 14 N -0.82 -51.67 11.85 21.83 0.26 -51.41 15 15 Si 1.00 42.38 29.56 68.60 2.03 44.40 15 16 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 17 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 18 H -0.25 -9.73 7.11 99.48 0.71 -9.03 15 19 C -0.14 -2.68 6.63 30.80 0.20 -2.47 15 20 H 0.08 1.09 8.14 -2.39 -0.02 1.07 15 21 H 0.12 0.76 8.14 -2.39 -0.02 0.74 15 22 H 0.11 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 15 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 25 H 0.39 17.31 8.45 -92.71 -0.78 16.53 15 26 H 0.28 15.61 8.29 -92.71 -0.77 14.84 15 27 H 0.14 1.75 8.14 -2.39 -0.02 1.73 15 28 H 0.12 2.00 7.92 -2.39 -0.02 1.98 15 Total: -1.00 -85.58 254.07 2.32 -83.26 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.39 Total: 20.19 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 3.26 Total: 7.79 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -2.83 Total: -102.66 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.53 Total: -52.99 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -85.58 2.32 -83.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854801071.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.350 kcal (2) G-P(sol) polarization free energy of solvation -85.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds