Wall clock time and date at job start Sun Mar 29 2020 21:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.27647 * 125.76786 * 2 1 4 4 O 1.41388 * 113.17070 * 179.69481 * 3 2 1 5 5 C 1.44249 * 107.50617 * 17.37211 * 4 3 2 6 6 H 1.08996 * 111.01032 * 216.82300 * 5 4 3 7 7 C 1.53006 * 111.01109 * 92.95358 * 5 4 3 8 8 N 1.46502 * 109.46756 * 72.84139 * 7 5 4 9 9 C 1.34773 * 119.99601 * 179.97438 * 8 7 5 10 10 O 1.21690 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.46371 * 119.99695 * 179.97438 * 9 8 7 12 12 H 1.07994 * 120.00423 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99769 * 180.02562 * 11 9 8 14 14 N 1.30664 * 120.00338 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99908 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47229 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47219 * 119.99875 * 15 13 11 18 18 H 1.48500 * 109.46952 * 239.99745 * 15 13 11 19 19 C 1.51683 * 125.76985 * 180.02562 * 2 1 3 20 20 H 1.08995 * 109.47296 * 269.97363 * 1 2 3 21 21 H 1.08993 * 109.46724 * 29.97727 * 1 2 3 22 22 H 1.08998 * 109.46866 * 149.97439 * 1 2 3 23 23 H 1.08998 * 109.46940 * 192.84345 * 7 5 4 24 24 H 1.08994 * 109.47181 * 312.84148 * 7 5 4 25 25 H 0.96995 * 119.99972 * 359.97438 * 8 7 5 26 26 H 0.96997 * 120.00523 * 180.02562 * 14 13 11 27 27 H 1.09000 * 110.80382 * 46.45992 * 19 2 1 28 28 H 1.09000 * 110.81123 * 282.94989 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2531 1.0357 0.0000 4 8 3.6329 0.7274 0.0069 5 6 3.7718 -0.6499 -0.3989 6 1 4.5760 -1.1398 0.1500 7 6 3.9965 -0.7569 -1.9086 8 7 5.3532 -0.3093 -2.2333 9 6 5.7770 -0.3166 -3.5126 10 8 5.0330 -0.6954 -4.3980 11 6 7.1323 0.1311 -3.8371 12 1 7.7927 0.4668 -3.0514 13 6 7.5725 0.1240 -5.1666 14 7 6.7737 -0.2827 -6.1173 15 14 9.3024 0.6947 -5.5807 16 1 10.0009 1.1016 -4.3350 17 1 10.0483 -0.4149 -6.2272 18 1 9.2330 1.8515 -6.5092 19 6 2.3936 -1.2307 -0.0006 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3632 0.8902 -0.5135 22 1 -0.3633 -0.8897 -0.5142 23 1 3.8710 -1.7933 -2.2220 24 1 3.2727 -0.1298 -2.4290 25 1 5.9463 -0.0078 -1.5276 26 1 7.0787 -0.2880 -7.0380 27 1 2.0504 -1.9548 -0.7395 28 1 2.4347 -1.6788 0.9922 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854801072.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:58 Heat of formation + Delta-G solvation = -26.578321 kcal Electronic energy + Delta-G solvation = -13714.331135 eV Core-core repulsion = 11153.199498 eV Total energy + Delta-G solvation = -2561.131637 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.15858 -37.14968 -34.06575 -33.24118 -32.30014 -30.54234 -28.45768 -26.96586 -24.99098 -21.63796 -19.93048 -19.42587 -17.27955 -16.57149 -15.56645 -15.32248 -14.98449 -14.18123 -14.03651 -13.64240 -13.12981 -13.02733 -12.72684 -12.40178 -12.20710 -11.63371 -11.43530 -11.20622 -11.05521 -10.91137 -10.51450 -10.43280 -10.17320 -9.25303 -8.83904 -7.61135 -7.51127 -6.16725 -4.61460 1.88492 3.15272 3.20974 3.23515 3.28460 4.06905 4.13971 4.46896 4.54335 4.62201 4.82099 5.15657 5.26600 5.28361 5.37545 5.45931 5.50873 5.69580 5.81270 6.05602 6.29561 6.42477 7.46221 7.53151 7.94687 8.08937 8.35421 9.04933 9.54593 10.61829 10.80061 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.068880 B = 0.006228 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.409132 B = 4494.477188 C = 4651.007394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.073 3.927 3 N -0.292 5.292 4 O -0.190 6.190 5 C 0.031 3.969 6 H 0.117 0.883 7 C 0.124 3.876 8 N -0.763 5.763 9 C 0.554 3.446 10 O -0.583 6.583 11 C -0.543 4.543 12 H 0.069 0.931 13 C 0.086 3.914 14 N -0.769 5.769 15 Si 0.909 3.091 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.146 4.146 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.052 0.948 25 H 0.383 0.617 26 H 0.267 0.733 27 H 0.105 0.895 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 -2.547 11.953 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 N -0.034 5.034 4 O -0.209 6.209 5 C -0.028 4.028 6 H 0.134 0.866 7 C -0.002 4.002 8 N -0.419 5.419 9 C 0.359 3.641 10 O -0.466 6.466 11 C -0.580 4.580 12 H 0.087 0.913 13 C -0.133 4.133 14 N -0.398 5.398 15 Si 0.734 3.266 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.186 4.186 20 H 0.104 0.896 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.215 0.785 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.744 -1.655 11.140 14.258 hybrid contribution 1.227 -0.575 0.068 1.357 sum -7.516 -2.230 11.208 13.678 Atomic orbital electron populations 1.20382 0.85604 1.04457 1.03732 1.26244 0.98040 0.92460 0.95317 1.77827 0.89869 1.23565 1.12118 1.91297 1.15000 1.27648 1.86940 1.24070 0.97684 0.83587 0.97415 0.86556 1.21225 0.88468 0.99767 0.90748 1.46039 1.12558 1.73030 1.10245 1.18246 0.88366 0.78130 0.79397 1.90590 1.57652 1.52250 1.46134 1.20918 0.97556 1.46211 0.93355 0.91296 1.25724 0.98383 0.93154 0.96035 1.70031 1.34967 1.34320 1.00457 0.86299 0.82549 0.78722 0.79078 1.18736 1.20180 1.20152 1.23124 0.92291 0.98693 1.04462 0.89573 0.89889 0.89625 0.92044 0.93008 0.78539 0.92187 0.87709 0.88080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.49 36.01 0.38 -0.28 15 2 C 0.07 0.90 7.45 -78.57 -0.59 0.32 15 3 N -0.29 -4.83 12.45 35.65 0.44 -4.38 15 4 O -0.19 -3.45 12.24 -11.37 -0.14 -3.59 15 5 C 0.03 0.48 3.86 -25.79 -0.10 0.38 15 6 H 0.12 1.55 8.14 -51.93 -0.42 1.12 15 7 C 0.12 2.47 5.38 -4.04 -0.02 2.45 15 8 N -0.76 -18.07 5.55 -61.72 -0.34 -18.42 15 9 C 0.55 16.44 7.75 -12.99 -0.10 16.34 15 10 O -0.58 -19.50 15.02 5.20 0.08 -19.42 15 11 C -0.54 -15.89 9.54 -35.63 -0.34 -16.23 15 12 H 0.07 1.86 7.85 -52.49 -0.41 1.44 15 13 C 0.09 2.48 5.50 -17.37 -0.10 2.39 15 14 N -0.77 -23.60 11.83 55.55 0.66 -22.94 15 15 Si 0.91 20.64 29.56 -169.99 -5.02 15.61 15 16 H -0.26 -5.78 7.11 56.52 0.40 -5.38 15 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 19 C -0.15 -1.64 6.62 -26.46 -0.18 -1.81 15 20 H 0.09 0.51 8.14 -51.93 -0.42 0.08 15 21 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.06 1.21 8.12 -51.93 -0.42 0.79 15 24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 15 25 H 0.38 8.15 8.45 -40.82 -0.35 7.81 15 26 H 0.27 7.40 8.29 -40.82 -0.34 7.06 15 27 H 0.10 1.03 7.90 -51.93 -0.41 0.62 15 28 H 0.10 0.88 8.14 -51.93 -0.42 0.45 15 LS Contribution 254.02 15.07 3.83 3.83 Total: -1.00 -37.34 254.02 -4.80 -42.14 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.26 Total: 3.62 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.04 Total: 3.55 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.76 Total: -45.74 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.06 Total: -23.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -37.34 -4.80 -42.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854801072.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.562 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds