Wall clock time and date at job start Sun Mar 29 2020 21:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52995 * 109.47032 * 119.99428 * 2 1 3 5 5 C 1.50692 * 109.47384 * 295.00386 * 4 2 1 6 6 H 1.08003 * 120.00239 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99954 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99841 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00116 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47078 * 89.99781 * 9 7 5 11 11 H 1.48497 * 109.47395 * 210.00073 * 9 7 5 12 12 H 1.48503 * 109.47103 * 329.99921 * 9 7 5 13 13 C 1.52998 * 109.47379 * 239.99790 * 2 1 3 14 14 N 1.46898 * 109.47440 * 175.43509 * 13 2 1 15 15 C 1.47478 * 110.99874 * 280.36554 * 14 13 2 16 16 C 1.53643 * 87.95062 * 221.34454 * 15 14 13 17 17 C 1.47482 * 111.00352 * 184.38991 * 14 13 2 18 18 C 1.52993 * 113.47597 * 253.47465 * 17 14 13 19 19 C 1.52997 * 113.47107 * 23.87975 * 17 14 13 20 20 H 1.08994 * 109.47202 * 305.11986 * 1 2 3 21 21 H 1.09002 * 109.46876 * 65.12154 * 1 2 3 22 22 H 1.09006 * 109.46840 * 185.11442 * 1 2 3 23 23 H 1.09011 * 109.46902 * 55.00590 * 4 2 1 24 24 H 1.08998 * 109.47205 * 174.99958 * 4 2 1 25 25 H 0.96995 * 119.99806 * 180.02562 * 8 7 5 26 26 H 1.09003 * 109.46996 * 55.43663 * 13 2 1 27 27 H 1.09000 * 109.47459 * 295.44069 * 13 2 1 28 28 H 1.09000 * 113.48060 * 336.05589 * 15 14 13 29 29 H 1.08995 * 113.47931 * 106.47140 * 15 14 13 30 30 H 1.08992 * 114.16625 * 272.34971 * 16 15 14 31 31 H 1.09003 * 114.20103 * 139.60520 * 16 15 14 32 32 H 1.08996 * 109.47005 * 181.10239 * 18 17 14 33 33 H 1.09004 * 109.47088 * 301.10082 * 18 17 14 34 34 H 1.08997 * 109.47326 * 61.09715 * 18 17 14 35 35 H 1.09008 * 109.47490 * 298.89348 * 19 17 14 36 36 H 1.08993 * 109.47489 * 58.89688 * 19 17 14 37 37 H 1.09004 * 109.46708 * 178.90022 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0799 0.9743 2.3756 7 6 1.9923 -0.4021 3.7283 8 7 1.6448 0.2775 4.7994 9 14 2.9615 -1.9894 3.9030 10 1 4.4151 -1.6869 3.8789 11 1 2.6131 -2.6430 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0401 -0.7213 -1.2492 14 7 3.5050 -0.6266 -1.3056 15 6 3.9301 0.6882 -1.8209 16 6 5.0052 -0.0421 -2.6402 17 6 4.0255 -1.2206 -2.5510 18 6 4.7137 -2.5708 -2.3411 19 6 3.0013 -1.2490 -3.6872 20 1 -0.3633 0.5912 0.8405 21 1 -0.3633 0.4323 -0.9323 22 1 -0.3633 -1.0236 0.0916 23 1 1.6054 -1.7198 1.2952 24 1 3.1263 -0.7994 1.2057 25 1 1.8920 -0.0454 5.6800 26 1 1.6116 -0.2568 -2.1373 27 1 1.7451 -1.7698 -1.2093 28 1 3.1753 1.1784 -2.4359 29 1 4.3387 1.3444 -1.0524 30 1 5.9425 -0.1996 -2.1066 31 1 5.1417 0.3495 -3.6482 32 1 5.0890 -2.9396 -3.2956 33 1 5.5446 -2.4510 -1.6458 34 1 3.9978 -3.2838 -1.9321 35 1 2.1444 -1.8533 -3.3891 36 1 2.6714 -0.2331 -3.9045 37 1 3.4583 -1.6809 -4.5776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876744683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:58 Heat of formation + Delta-G solvation = 16.546965 kcal Electronic energy + Delta-G solvation = -14773.069527 eV Core-core repulsion = 12550.900042 eV Total energy + Delta-G solvation = -2222.169484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58784 -35.42069 -32.23143 -30.95998 -29.32052 -27.49884 -27.36946 -24.20112 -22.68554 -22.14112 -18.98621 -17.99390 -16.68691 -15.71735 -15.31305 -14.83727 -14.37972 -13.61510 -13.29943 -12.94736 -12.61510 -12.29853 -12.23879 -11.96748 -11.83476 -11.53023 -11.42096 -11.22647 -10.96523 -10.91941 -10.50955 -10.19903 -10.00767 -9.78635 -9.53666 -9.34825 -8.90476 -8.44178 -8.33698 -5.91962 -3.87243 3.41738 3.47645 3.54835 4.16606 4.54114 4.58209 4.83143 5.10104 5.28771 5.34990 5.43546 5.49963 5.57020 5.68477 5.73902 5.82284 5.85144 5.89896 6.00145 6.03045 6.10780 6.14817 6.24136 6.36074 6.37962 6.47520 6.76092 6.93106 7.03795 7.15732 7.48508 7.55452 7.71374 7.96663 8.68533 9.14000 9.72569 11.21771 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.008920 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.461346 B = 3138.270072 C = 3488.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 H 0.059 0.941 4 C -0.001 4.001 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.063 3.937 8 N -0.910 5.910 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.024 3.976 14 N -0.451 5.451 15 C 0.000 4.000 16 C -0.139 4.139 17 C 0.042 3.958 18 C -0.125 4.125 19 C -0.154 4.154 20 H 0.066 0.934 21 H 0.029 0.971 22 H 0.045 0.955 23 H 0.008 0.992 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 -2.937 -16.923 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.039 4.039 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.550 5.550 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.218 1.218 12 H -0.190 1.190 13 C -0.104 4.104 14 N -0.173 5.173 15 C -0.129 4.129 16 C -0.177 4.177 17 C -0.049 4.049 18 C -0.182 4.182 19 C -0.212 4.212 20 H 0.085 0.915 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.027 0.973 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.543 -3.196 -16.053 16.987 hybrid contribution 0.013 -0.526 -0.425 0.677 sum 4.555 -3.722 -16.478 17.497 Atomic orbital electron populations 1.21702 0.96033 1.01265 1.00046 1.20955 0.94583 0.99197 0.94362 0.92257 1.19530 0.96715 0.95198 0.92443 1.21237 1.34855 1.09339 0.89474 0.91237 1.25016 0.95764 0.96931 0.95955 1.69930 1.47708 1.39421 0.97938 0.86769 0.80712 0.84624 0.77111 1.20405 1.21819 1.19033 1.22827 0.88442 1.00989 0.98125 1.69100 1.12197 1.06673 1.29321 1.23692 0.97182 0.94072 0.97998 1.23313 0.97905 0.96425 1.00008 1.22701 0.95419 0.95861 0.90928 1.21579 1.00411 0.95314 1.00937 1.22038 0.99233 1.02049 0.97895 0.91539 0.95144 0.93608 0.97350 0.95611 0.93020 0.94736 0.91487 0.91837 0.89682 0.89112 0.91264 0.92775 0.91933 0.92569 0.91701 0.92381 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.92 37.16 0.33 -2.21 16 2 C -0.07 -1.48 2.43 -90.62 -0.22 -1.70 16 3 H 0.06 1.27 7.78 -51.93 -0.40 0.86 16 4 C 0.00 -0.04 3.46 -27.89 -0.10 -0.13 16 5 C -0.51 -14.96 9.03 -34.44 -0.31 -15.27 16 6 H 0.07 2.17 7.30 -52.48 -0.38 1.79 16 7 C 0.06 1.91 5.47 -17.81 -0.10 1.81 16 8 N -0.91 -28.92 13.96 55.43 0.77 -28.15 16 9 Si 0.88 22.91 27.47 -169.99 -4.67 18.24 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.27 -6.73 6.54 56.52 0.37 -6.36 16 13 C 0.02 0.42 3.16 -3.83 -0.01 0.41 16 14 N -0.45 -7.49 5.52 -228.42 -1.26 -8.75 16 15 C 0.00 -0.01 6.89 -7.47 -0.05 -0.06 16 16 C -0.14 -1.66 7.58 -26.13 -0.20 -1.86 16 17 C 0.04 0.54 1.36 -135.32 -0.18 0.36 16 18 C -0.12 -1.55 9.45 37.15 0.35 -1.20 16 19 C -0.15 -1.72 7.60 37.16 0.28 -1.44 16 20 H 0.07 1.40 7.10 -51.93 -0.37 1.03 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 23 H 0.01 0.21 7.20 -51.92 -0.37 -0.16 16 24 H 0.03 0.66 7.03 -51.93 -0.37 0.30 16 25 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.03 0.52 5.90 -51.93 -0.31 0.22 16 27 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 28 H 0.06 0.84 6.82 -51.93 -0.35 0.49 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 31 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.75 7.04 -51.92 -0.37 0.39 16 36 H 0.06 0.63 6.63 -51.93 -0.34 0.29 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 285.11 15.07 4.30 4.30 Total: -1.00 -31.48 285.11 -7.70 -39.18 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -6.64 Total: -3.53 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -0.21 Total: -21.30 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.49 Total: -36.90 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.48 -7.70 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876744683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.732 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds