Wall clock time and date at job start Sun Mar 29 2020 21:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46899 * 2 1 4 4 C 1.52995 * 109.47032 * 119.99428 * 2 1 3 5 5 C 1.50692 * 109.47384 * 295.00386 * 4 2 1 6 6 H 1.08003 * 120.00239 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99954 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99841 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00116 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47078 * 89.99781 * 9 7 5 11 11 H 1.48497 * 109.47395 * 210.00073 * 9 7 5 12 12 H 1.48503 * 109.47103 * 329.99921 * 9 7 5 13 13 C 1.52998 * 109.47379 * 239.99790 * 2 1 3 14 14 N 1.46898 * 109.47440 * 175.43509 * 13 2 1 15 15 C 1.47478 * 110.99874 * 280.36554 * 14 13 2 16 16 C 1.53643 * 87.95062 * 221.34454 * 15 14 13 17 17 C 1.47482 * 111.00352 * 184.38991 * 14 13 2 18 18 C 1.52993 * 113.47597 * 253.47465 * 17 14 13 19 19 C 1.52997 * 113.47107 * 23.87975 * 17 14 13 20 20 H 1.08994 * 109.47202 * 305.11986 * 1 2 3 21 21 H 1.09002 * 109.46876 * 65.12154 * 1 2 3 22 22 H 1.09006 * 109.46840 * 185.11442 * 1 2 3 23 23 H 1.09011 * 109.46902 * 55.00590 * 4 2 1 24 24 H 1.08998 * 109.47205 * 174.99958 * 4 2 1 25 25 H 0.96995 * 119.99806 * 180.02562 * 8 7 5 26 26 H 1.09003 * 109.46996 * 55.43663 * 13 2 1 27 27 H 1.09000 * 109.47459 * 295.44069 * 13 2 1 28 28 H 1.09000 * 113.48060 * 336.05589 * 15 14 13 29 29 H 1.08995 * 113.47931 * 106.47140 * 15 14 13 30 30 H 1.08992 * 114.16625 * 272.34971 * 16 15 14 31 31 H 1.09003 * 114.20103 * 139.60520 * 16 15 14 32 32 H 1.08996 * 109.47005 * 181.10239 * 18 17 14 33 33 H 1.09004 * 109.47088 * 301.10082 * 18 17 14 34 34 H 1.08997 * 109.47326 * 61.09715 * 18 17 14 35 35 H 1.09008 * 109.47490 * 298.89348 * 19 17 14 36 36 H 1.08993 * 109.47489 * 58.89688 * 19 17 14 37 37 H 1.09004 * 109.46708 * 178.90022 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4765 6 1 1.0799 0.9743 2.3756 7 6 1.9923 -0.4021 3.7283 8 7 1.6448 0.2775 4.7994 9 14 2.9615 -1.9894 3.9030 10 1 4.4151 -1.6869 3.8789 11 1 2.6131 -2.6430 5.1901 12 1 2.6266 -2.9001 2.7788 13 6 2.0401 -0.7213 -1.2492 14 7 3.5050 -0.6266 -1.3056 15 6 3.9301 0.6882 -1.8209 16 6 5.0052 -0.0421 -2.6402 17 6 4.0255 -1.2206 -2.5510 18 6 4.7137 -2.5708 -2.3411 19 6 3.0013 -1.2490 -3.6872 20 1 -0.3633 0.5912 0.8405 21 1 -0.3633 0.4323 -0.9323 22 1 -0.3633 -1.0236 0.0916 23 1 1.6054 -1.7198 1.2952 24 1 3.1263 -0.7994 1.2057 25 1 1.8920 -0.0454 5.6800 26 1 1.6116 -0.2568 -2.1373 27 1 1.7451 -1.7698 -1.2093 28 1 3.1753 1.1784 -2.4359 29 1 4.3387 1.3444 -1.0524 30 1 5.9425 -0.1996 -2.1066 31 1 5.1417 0.3495 -3.6482 32 1 5.0890 -2.9396 -3.2956 33 1 5.5446 -2.4510 -1.6458 34 1 3.9978 -3.2838 -1.9321 35 1 2.1444 -1.8533 -3.3891 36 1 2.6714 -0.2331 -3.9045 37 1 3.4583 -1.6809 -4.5776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876744683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:58 Heat of formation + Delta-G solvation = -4.435583 kcal Electronic energy + Delta-G solvation = -14773.979398 eV Core-core repulsion = 12550.900042 eV Total energy + Delta-G solvation = -2223.079356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.68093 -37.12651 -34.41948 -32.03284 -30.70905 -29.30854 -28.34295 -25.70844 -24.03081 -23.70269 -20.66381 -19.06372 -18.91167 -16.86249 -16.57678 -16.18247 -16.04343 -15.32264 -14.75415 -14.30498 -14.23018 -13.97352 -13.46801 -13.17936 -13.01458 -12.95348 -12.85219 -12.50527 -12.35607 -12.31377 -12.01557 -11.86050 -11.59628 -11.44473 -11.16159 -11.01544 -10.89623 -10.71985 -9.55285 -8.26493 -6.26931 1.34231 1.34961 1.48450 2.37624 3.08688 3.10171 3.54390 3.86018 4.00769 4.19426 4.24777 4.33854 4.41459 4.51826 4.64412 4.68018 4.78260 4.82593 4.86738 4.92108 4.96204 4.99812 5.05331 5.11231 5.18052 5.23839 5.33688 5.44190 5.46704 5.54426 5.67703 5.76086 5.77350 6.33524 6.36616 6.80356 7.36511 8.90464 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.008920 C = 0.008024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.461346 B = 3138.270072 C = 3488.588607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.070 4.070 3 H 0.044 0.956 4 C 0.008 3.992 5 C -0.517 4.517 6 H 0.033 0.967 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.253 1.253 13 C 0.038 3.962 14 N -0.490 5.490 15 C -0.006 4.006 16 C -0.124 4.124 17 C 0.040 3.960 18 C -0.124 4.124 19 C -0.150 4.150 20 H 0.034 0.966 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.005 0.995 24 H 0.018 0.982 25 H 0.264 0.736 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.296 -19.431 20.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.029 4.029 5 C -0.555 4.555 6 H 0.051 0.949 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.177 1.177 13 C -0.090 4.090 14 N -0.213 5.213 15 C -0.135 4.135 16 C -0.162 4.162 17 C -0.050 4.050 18 C -0.182 4.182 19 C -0.208 4.208 20 H 0.053 0.947 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.361 -4.553 -18.581 19.868 hybrid contribution -0.265 -0.015 0.362 0.449 sum 5.096 -4.568 -18.219 19.462 Atomic orbital electron populations 1.21628 0.95068 1.01226 1.00619 1.20872 0.95469 0.98252 0.94345 0.93768 1.19399 0.96102 0.94713 0.92720 1.21564 1.33947 1.08505 0.91505 0.94859 1.25943 0.97038 1.00757 0.95601 1.70073 1.49379 1.41555 0.98627 0.85688 0.79191 0.80236 0.77658 1.19648 1.20968 1.17681 1.22614 0.89371 1.00292 0.96769 1.69071 1.11597 1.08442 1.32177 1.23750 0.98421 0.93295 0.98013 1.23252 0.96864 0.95132 1.00912 1.22851 0.95915 0.96217 0.90010 1.21597 0.99690 0.94884 1.02038 1.22017 0.98531 1.02479 0.97811 0.94665 0.91546 0.93208 0.97667 0.96397 0.92752 0.92237 0.91750 0.90563 0.91689 0.89472 0.88525 0.90123 0.93062 0.93776 0.92228 0.91905 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 8.92 71.98 0.64 -4.16 16 2 C -0.07 -2.87 2.43 -10.79 -0.03 -2.89 16 3 H 0.04 1.91 7.78 -2.39 -0.02 1.89 16 4 C 0.01 0.41 3.46 29.84 0.10 0.51 16 5 C -0.52 -31.17 9.03 25.60 0.23 -30.94 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.16 16 7 C 0.00 0.15 5.47 84.66 0.46 0.61 16 8 N -0.95 -62.23 13.96 21.45 0.30 -61.93 16 9 Si 0.95 47.55 27.47 68.60 1.88 49.43 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.25 -12.06 6.54 99.48 0.65 -11.41 16 13 C 0.04 1.22 3.16 86.30 0.27 1.49 16 14 N -0.49 -15.49 5.52 -876.57 -4.84 -20.33 16 15 C -0.01 -0.16 6.89 83.62 0.58 0.42 16 16 C -0.12 -2.62 7.58 30.98 0.23 -2.39 16 17 C 0.04 0.94 1.36 0.80 0.00 0.94 16 18 C -0.12 -2.78 9.45 71.98 0.68 -2.10 16 19 C -0.15 -2.77 7.60 71.98 0.55 -2.23 16 20 H 0.03 1.51 7.10 -2.39 -0.02 1.49 16 21 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.01 0.25 7.20 -2.38 -0.02 0.24 16 24 H 0.02 0.92 7.03 -2.39 -0.02 0.90 16 25 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 26 H 0.06 1.61 5.90 -2.39 -0.01 1.60 16 27 H 0.06 2.10 7.96 -2.39 -0.02 2.08 16 28 H 0.08 1.84 6.82 -2.39 -0.02 1.82 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 1.90 8.02 -2.39 -0.02 1.89 16 31 H 0.10 1.53 8.11 -2.39 -0.02 1.51 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.24 8.00 -2.38 -0.02 1.22 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.17 7.04 -2.38 -0.02 1.16 16 36 H 0.06 1.10 6.63 -2.39 -0.02 1.09 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -69.00 285.11 2.02 -66.98 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.95 Total: 6.59 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 3.72 Total: -40.75 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -4.54 Total: -82.26 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.43 kcal Total: -69.00 2.02 -66.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876744683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.546 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds