Wall clock time and date at job start Sun Mar 29 2020 21:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47588 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47517 * 119.99959 * 9 7 5 12 12 H 1.48505 * 109.47179 * 239.99612 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.47481 * 111.00304 * 265.96805 * 14 13 2 16 16 C 1.53506 * 87.93685 * 221.30251 * 15 14 13 17 17 C 1.47479 * 110.99664 * 170.00118 * 14 13 2 18 18 C 1.52995 * 113.47668 * 253.47201 * 17 14 13 19 19 C 1.53003 * 113.47859 * 23.87530 * 17 14 13 20 20 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 22 22 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 23 23 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 24 24 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 25 25 H 0.96997 * 120.00335 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 27 27 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 28 28 H 1.09003 * 113.47667 * 336.07115 * 15 14 13 29 29 H 1.08997 * 113.47252 * 106.53050 * 15 14 13 30 30 H 1.09001 * 114.16634 * 272.38208 * 16 15 14 31 31 H 1.08995 * 114.34499 * 139.68301 * 16 15 14 32 32 H 1.09000 * 109.47761 * 59.99988 * 18 17 14 33 33 H 1.09001 * 109.47452 * 179.97438 * 18 17 14 34 34 H 1.09003 * 109.47453 * 299.99553 * 18 17 14 35 35 H 1.09005 * 109.46953 * 59.99898 * 19 17 14 36 36 H 1.09002 * 109.47356 * 179.97438 * 19 17 14 37 37 H 1.08999 * 109.47094 * 300.00569 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 0.7424 1.7745 -4.8434 11 1 2.7172 0.9668 -5.9965 12 1 0.6442 -0.2855 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.7283 0.9544 2.8630 16 6 2.4289 0.5563 4.3150 17 6 1.9134 -0.7388 3.6719 18 6 0.6448 -1.2837 4.3312 19 6 2.9950 -1.8069 3.4978 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1264 -0.7994 -1.2055 24 1 1.6054 -1.7197 -1.2952 25 1 2.9228 -1.8422 -4.7317 26 1 1.6054 -1.7198 1.2951 27 1 3.1263 -0.7995 1.2056 28 1 3.7171 0.6462 2.5233 29 1 2.5151 2.0013 2.6470 30 1 1.6542 1.1569 4.7917 31 1 3.3146 0.4242 4.9364 32 1 0.1262 -1.9410 3.6333 33 1 0.9128 -1.8442 5.2268 34 1 -0.0083 -0.4545 4.6030 35 1 3.9314 -1.3314 3.2058 36 1 3.1358 -2.3384 4.4390 37 1 2.6888 -2.5114 2.7245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876744684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:00 Heat of formation + Delta-G solvation = 11.340485 kcal Electronic energy + Delta-G solvation = -14565.267838 eV Core-core repulsion = 12342.872584 eV Total energy + Delta-G solvation = -2222.395254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.55619 -35.29028 -32.33985 -30.95214 -29.16291 -27.42578 -26.62417 -24.59031 -22.69709 -22.30534 -18.92927 -18.02676 -16.34681 -15.58320 -15.29477 -14.83887 -14.38913 -13.90630 -13.29735 -12.81828 -12.45771 -12.27562 -12.07748 -12.03223 -11.56106 -11.47203 -11.33523 -11.01978 -10.82407 -10.72999 -10.58453 -10.28886 -10.15670 -10.04144 -9.55795 -9.04478 -8.90207 -8.43555 -8.30137 -5.94802 -3.95476 3.33957 3.41374 3.46024 4.17449 4.50072 4.54051 4.84848 5.12682 5.31929 5.39079 5.41373 5.51610 5.63596 5.72272 5.80005 5.87461 5.91150 5.96037 5.96564 6.10432 6.14137 6.25694 6.39312 6.41356 6.56566 6.72763 6.88132 7.11946 7.26690 7.28276 7.50234 7.73719 7.90184 8.06160 8.51052 9.11288 9.67783 11.16909 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055977 B = 0.006418 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.081087 B = 4361.468757 C = 4439.307058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.026 3.974 14 N -0.458 5.458 15 C -0.002 4.002 16 C -0.140 4.140 17 C 0.044 3.956 18 C -0.124 4.124 19 C -0.157 4.157 20 H 0.036 0.964 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.011 0.989 24 H 0.015 0.985 25 H 0.258 0.742 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 1.407 15.523 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.102 4.102 14 N -0.180 5.180 15 C -0.131 4.131 16 C -0.177 4.177 17 C -0.047 4.047 18 C -0.182 4.182 19 C -0.215 4.215 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.033 0.967 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.024 1.528 15.200 15.311 hybrid contribution 0.683 0.018 -1.000 1.211 sum -0.341 1.545 14.201 14.289 Atomic orbital electron populations 1.21578 0.95962 1.00263 1.00157 1.21091 0.95758 0.98980 0.93585 0.92846 1.19139 0.95815 0.95521 0.90630 1.21293 1.34318 1.08230 0.90988 0.92533 1.25025 0.95392 0.95108 0.99096 1.69976 1.39316 1.21320 1.23210 0.86577 0.78234 0.80161 0.83294 1.19744 1.21119 1.21091 1.22837 0.98207 0.97663 0.91459 1.69036 1.37636 1.10589 1.00767 1.23736 0.94937 0.99711 0.94675 1.23299 1.01086 0.97008 0.96337 1.22665 0.95269 0.93608 0.93111 1.21577 0.96317 1.00879 0.99390 1.22077 0.98185 0.98906 1.02366 0.94434 0.93967 0.92807 0.97047 0.96708 0.93199 0.91616 0.94145 0.91529 0.90137 0.89315 0.91260 0.92472 0.92775 0.92163 0.92312 0.92076 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.89 37.16 0.33 -2.18 16 2 C -0.08 -1.62 2.55 -90.62 -0.23 -1.85 16 3 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.65 8.41 -34.44 -0.29 -14.94 16 6 H 0.06 1.60 7.06 -52.49 -0.37 1.23 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.03 0.48 3.15 -3.82 -0.01 0.47 16 14 N -0.46 -7.18 5.58 -228.66 -1.27 -8.45 16 15 C 0.00 -0.02 7.37 -7.56 -0.06 -0.08 16 16 C -0.14 -1.59 7.57 -26.20 -0.20 -1.79 16 17 C 0.04 0.56 1.33 -135.33 -0.18 0.38 16 18 C -0.12 -1.45 9.46 37.15 0.35 -1.10 16 19 C -0.16 -1.90 7.78 37.16 0.29 -1.61 16 20 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 22 H 0.05 1.17 6.95 -51.93 -0.36 0.81 16 23 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.07 1.21 7.14 -51.93 -0.37 0.84 16 27 H 0.04 0.74 6.52 -51.93 -0.34 0.40 16 28 H 0.07 0.92 6.65 -51.93 -0.35 0.57 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.09 0.96 8.00 -51.93 -0.42 0.54 16 31 H 0.07 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.69 7.97 -51.93 -0.41 0.28 16 35 H 0.06 0.71 6.83 -51.93 -0.35 0.36 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.90 6.64 -51.93 -0.34 0.56 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -30.17 289.19 -8.07 -38.24 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -6.65 Total: -3.84 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -0.22 Total: -20.63 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.54 Total: -35.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.17 -8.07 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876744684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.578 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds