Wall clock time and date at job start Sun Mar 29 2020 21:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50702 * 109.46995 * 65.00211 * 4 2 1 6 6 H 1.08000 * 119.99882 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00347 * 180.02562 * 5 4 2 8 8 N 1.31510 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00057 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47588 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47517 * 119.99959 * 9 7 5 12 12 H 1.48505 * 109.47179 * 239.99612 * 9 7 5 13 13 C 1.53006 * 109.47102 * 120.00237 * 2 1 3 14 14 N 1.46902 * 109.46626 * 294.99959 * 13 2 1 15 15 C 1.47481 * 111.00304 * 265.96805 * 14 13 2 16 16 C 1.53506 * 87.93685 * 221.30251 * 15 14 13 17 17 C 1.47479 * 110.99664 * 170.00118 * 14 13 2 18 18 C 1.52995 * 113.47668 * 253.47201 * 17 14 13 19 19 C 1.53003 * 113.47859 * 23.87530 * 17 14 13 20 20 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 22 22 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 23 23 H 1.09007 * 109.47194 * 184.99702 * 4 2 1 24 24 H 1.08992 * 109.47477 * 305.00383 * 4 2 1 25 25 H 0.96997 * 120.00335 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.46955 * 55.00306 * 13 2 1 27 27 H 1.09000 * 109.47050 * 175.00134 * 13 2 1 28 28 H 1.09003 * 113.47667 * 336.07115 * 15 14 13 29 29 H 1.08997 * 113.47252 * 106.53050 * 15 14 13 30 30 H 1.09001 * 114.16634 * 272.38208 * 16 15 14 31 31 H 1.08995 * 114.34499 * 139.68301 * 16 15 14 32 32 H 1.09000 * 109.47761 * 59.99988 * 18 17 14 33 33 H 1.09001 * 109.47452 * 179.97438 * 18 17 14 34 34 H 1.09003 * 109.47453 * 299.99553 * 18 17 14 35 35 H 1.09005 * 109.46953 * 59.99898 * 19 17 14 36 36 H 1.09002 * 109.47356 * 179.97438 * 19 17 14 37 37 H 1.08999 * 109.47094 * 300.00569 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4765 6 1 1.0800 0.9741 -2.3757 7 6 1.9924 -0.4022 -3.7283 8 7 2.6755 -1.5192 -3.8512 9 14 1.4989 0.5629 -5.2496 10 1 0.7424 1.7745 -4.8434 11 1 2.7172 0.9668 -5.9965 12 1 0.6442 -0.2855 -6.1184 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.7283 0.9544 2.8630 16 6 2.4289 0.5563 4.3150 17 6 1.9134 -0.7388 3.6719 18 6 0.6448 -1.2837 4.3312 19 6 2.9950 -1.8069 3.4978 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1264 -0.7994 -1.2055 24 1 1.6054 -1.7197 -1.2952 25 1 2.9228 -1.8422 -4.7317 26 1 1.6054 -1.7198 1.2951 27 1 3.1263 -0.7995 1.2056 28 1 3.7171 0.6462 2.5233 29 1 2.5151 2.0013 2.6470 30 1 1.6542 1.1569 4.7917 31 1 3.3146 0.4242 4.9364 32 1 0.1262 -1.9410 3.6333 33 1 0.9128 -1.8442 5.2268 34 1 -0.0083 -0.4545 4.6030 35 1 3.9314 -1.3314 3.2058 36 1 3.1358 -2.3384 4.4390 37 1 2.6888 -2.5114 2.7245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876744684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:00 Heat of formation + Delta-G solvation = -7.567260 kcal Electronic energy + Delta-G solvation = -14566.087739 eV Core-core repulsion = 12342.872584 eV Total energy + Delta-G solvation = -2223.215156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67304 -37.10984 -34.43336 -32.04795 -30.57630 -28.72156 -28.25536 -26.27751 -24.15048 -23.69512 -20.69447 -19.12921 -18.46590 -16.89582 -16.55241 -16.28538 -16.01551 -15.47606 -14.58517 -14.39245 -14.20474 -13.55415 -13.41811 -13.19965 -13.14600 -12.78543 -12.73335 -12.52936 -12.41311 -12.24074 -12.17724 -11.98302 -11.76471 -11.47049 -11.13744 -10.96069 -10.79509 -10.55914 -9.66942 -8.19396 -6.28809 1.38573 1.38834 1.52390 2.40694 3.06505 3.13752 3.52462 3.84019 4.01303 4.17838 4.27126 4.38032 4.41042 4.52521 4.64885 4.71814 4.77569 4.83931 4.89392 4.91805 5.00813 5.02306 5.04362 5.16559 5.22869 5.28197 5.41737 5.44554 5.48775 5.56256 5.62373 5.82789 5.87476 6.19800 6.32540 6.86897 7.39560 8.93026 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.055977 B = 0.006418 C = 0.006306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.081087 B = 4361.468757 C = 4439.307058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 H 0.045 0.955 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.042 3.958 14 N -0.474 5.474 15 C -0.010 4.010 16 C -0.120 4.120 17 C 0.039 3.961 18 C -0.122 4.122 19 C -0.155 4.155 20 H 0.034 0.966 21 H 0.062 0.938 22 H 0.037 0.963 23 H -0.015 1.015 24 H -0.011 1.011 25 H 0.262 0.738 26 H 0.059 0.941 27 H 0.034 0.966 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 2.337 16.758 16.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.087 4.087 3 H 0.064 0.936 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.204 1.204 13 C -0.086 4.086 14 N -0.196 5.196 15 C -0.139 4.139 16 C -0.157 4.157 17 C -0.051 4.051 18 C -0.179 4.179 19 C -0.214 4.214 20 H 0.053 0.947 21 H 0.081 0.919 22 H 0.056 0.944 23 H 0.003 0.997 24 H 0.007 0.993 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.468 2.464 16.453 16.702 hybrid contribution 0.841 -0.293 -1.345 1.614 sum -0.626 2.171 15.108 15.276 Atomic orbital electron populations 1.21457 0.94929 1.00138 1.00324 1.20911 0.96490 0.98105 0.93154 0.93618 1.19012 0.93965 0.94599 0.92798 1.21658 1.34412 1.08523 0.92142 0.92329 1.25965 0.95207 0.96116 1.02671 1.70105 1.40325 1.22962 1.24281 0.85434 0.78139 0.78854 0.78856 1.18691 1.20348 1.20360 1.22518 0.97491 0.97143 0.91457 1.68999 1.38529 1.11461 1.00650 1.23831 0.94234 0.99240 0.96602 1.23241 1.02077 0.95412 0.94977 1.22843 0.96172 0.94433 0.91687 1.21585 0.95601 1.00928 0.99829 1.22063 0.97699 0.98528 1.03064 0.94681 0.91865 0.94373 0.99691 0.99283 0.92876 0.92263 0.94781 0.91846 0.90212 0.88254 0.89032 0.93920 0.90465 0.91893 0.92631 0.89643 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 8.89 71.98 0.64 -3.92 16 2 C -0.07 -2.97 2.55 -10.79 -0.03 -2.99 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.03 1.85 4.45 29.85 0.13 1.99 16 5 C -0.53 -30.97 8.41 25.60 0.22 -30.76 16 6 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 9 Si 0.96 45.43 29.54 68.60 2.03 47.45 16 10 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 C 0.04 1.56 3.15 86.31 0.27 1.83 16 14 N -0.47 -14.33 5.58 -877.34 -4.89 -19.22 16 15 C -0.01 -0.26 7.37 83.57 0.62 0.35 16 16 C -0.12 -2.35 7.57 30.94 0.23 -2.12 16 17 C 0.04 0.91 1.33 0.79 0.00 0.92 16 18 C -0.12 -2.55 9.46 71.98 0.68 -1.87 16 19 C -0.16 -3.51 7.78 71.98 0.56 -2.95 16 20 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 21 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 22 H 0.04 1.65 6.95 -2.39 -0.02 1.63 16 23 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.06 2.22 7.14 -2.39 -0.02 2.20 16 27 H 0.03 1.27 6.52 -2.39 -0.02 1.25 16 28 H 0.06 1.69 6.65 -2.39 -0.02 1.67 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 1.79 8.00 -2.39 -0.02 1.77 16 31 H 0.09 1.44 8.11 -2.39 -0.02 1.43 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.28 7.97 -2.39 -0.02 1.26 16 35 H 0.05 1.28 6.83 -2.38 -0.02 1.26 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 1.32 6.64 -2.39 -0.02 1.30 16 Total: -1.00 -64.97 289.19 2.21 -62.76 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.00 Total: 6.22 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.79 Total: -39.22 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -4.61 Total: -77.23 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.97 2.21 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876744684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.198 kcal (2) G-P(sol) polarization free energy of solvation -64.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds