Wall clock time and date at job start Sun Mar 29 2020 21:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.38603 * 120.00437 * 274.99998 * 13 3 2 15 15 N 1.29688 * 124.95456 * 179.97438 * 14 13 3 16 16 C 1.32115 * 116.87007 * 179.97438 * 15 14 13 17 17 C 1.33329 * 114.58233 * 0.02562 * 16 15 14 18 18 S 1.70970 * 124.94820 * 359.70137 * 14 13 3 19 19 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 20 20 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 22 22 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 23 23 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 24 24 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 25 25 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 26 26 H 1.07999 * 122.71075 * 179.97438 * 16 15 14 27 27 H 1.07992 * 125.95528 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4006 2.6805 1.3703 15 7 -0.0411 3.2831 2.4303 16 6 -1.2624 3.7831 2.3678 17 6 -1.8803 3.5934 1.2017 18 16 -0.7840 2.7157 0.1380 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 -0.8900 22 1 1.8934 -0.5138 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.8292 -0.0609 -2.9500 25 1 2.2719 2.1231 1.9979 26 1 -1.7233 4.3028 3.1947 27 1 -2.8773 3.9242 0.9512 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893187003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:00 Heat of formation + Delta-G solvation = 24.133295 kcal Electronic energy + Delta-G solvation = -12113.591466 eV Core-core repulsion = 9997.411721 eV Total energy + Delta-G solvation = -2116.179745 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.33441 -38.11893 -34.63231 -32.82693 -30.35393 -28.52560 -25.50081 -24.54271 -22.30917 -21.19844 -18.95570 -18.53682 -16.91229 -16.88386 -16.13542 -15.70280 -15.37456 -14.66927 -14.20605 -13.93827 -13.58955 -13.21073 -12.90775 -12.71925 -12.54578 -12.11933 -11.93305 -11.64759 -11.21091 -10.94034 -10.51763 -10.39103 -9.82141 -8.37961 -8.21414 -6.37776 0.29518 0.45175 1.17328 1.43577 1.45140 1.54596 2.21088 2.30338 2.56067 3.08373 4.06115 4.44143 4.49993 4.63643 4.66708 4.86062 4.91644 5.18801 5.29070 5.39869 5.52178 5.59910 5.74964 5.99724 6.15995 6.63049 6.81751 7.19027 7.34974 8.83144 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.053866 B = 0.009110 C = 0.008472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.684431 B = 3072.688375 C = 3304.187200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.281 3.719 4 H 0.020 0.980 5 C -0.554 4.554 6 H 0.062 0.938 7 C 0.027 3.973 8 N -0.906 5.906 9 Si 0.966 3.034 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.676 5.676 14 C 0.310 3.690 15 N -0.602 5.602 16 C 0.068 3.932 17 C -0.327 4.327 18 S 0.093 5.907 19 H 0.042 0.958 20 H 0.059 0.941 21 H 0.054 0.946 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.269 0.731 25 H 0.402 0.598 26 H 0.196 0.804 27 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 2.528 3.290 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.178 3.822 4 H 0.038 0.962 5 C -0.592 4.592 6 H 0.080 0.920 7 C -0.175 4.175 8 N -0.544 5.544 9 Si 0.791 3.209 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.196 1.196 13 N -0.312 5.312 14 C -0.061 4.061 15 N -0.331 5.331 16 C -0.081 4.081 17 C -0.468 4.468 18 S 0.339 5.661 19 H 0.061 0.939 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.238 0.762 26 H 0.212 0.788 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.909 2.009 2.357 7.571 hybrid contribution 0.889 0.357 0.798 1.247 sum -6.020 2.365 3.155 7.196 Atomic orbital electron populations 1.22071 0.96498 1.01097 1.00700 1.21931 0.94300 0.98826 1.01729 1.18744 0.94569 0.89415 0.79462 0.96189 1.21431 0.91301 1.39611 1.06846 0.91964 1.25590 1.02955 0.94079 0.94836 1.69958 1.36914 1.37795 1.09737 0.85434 0.79481 0.78619 0.77369 1.19876 1.20622 1.19607 1.44796 1.10422 1.57915 1.18096 1.23999 0.93199 0.95500 0.93418 1.66524 1.17366 1.22014 1.27151 1.21754 0.88413 0.99217 0.98739 1.26854 1.07063 1.14825 0.98046 1.84353 1.08121 1.55013 1.18613 0.93868 0.92250 0.92750 0.94627 0.89909 0.92187 0.76174 0.78759 0.78508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 8.16 71.98 0.59 -5.06 15 2 C -0.13 -5.86 5.45 30.59 0.17 -5.70 15 3 C 0.28 13.52 2.23 44.24 0.10 13.62 15 4 H 0.02 1.07 7.25 -2.39 -0.02 1.05 15 5 C -0.55 -28.72 8.73 25.60 0.22 -28.50 15 6 H 0.06 3.18 7.74 -2.91 -0.02 3.16 15 7 C 0.03 1.38 5.29 84.66 0.45 1.83 15 8 N -0.91 -48.39 11.29 21.45 0.24 -48.15 15 9 Si 0.97 41.14 29.54 68.60 2.03 43.17 15 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 15 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 12 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 13 N -0.68 -29.42 5.16 -333.99 -1.72 -31.14 15 14 C 0.31 12.59 6.86 179.32 1.23 13.82 15 15 N -0.60 -23.25 10.60 -202.03 -2.14 -25.39 15 16 C 0.07 2.12 11.34 83.54 0.95 3.06 15 17 C -0.33 -9.41 11.34 66.71 0.76 -8.66 15 18 S 0.09 3.30 17.63 -56.49 -1.00 2.30 15 19 H 0.04 1.65 5.29 -3.03 -0.02 1.64 15 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.05 2.08 6.84 -2.38 -0.02 2.07 15 22 H 0.03 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.08 4.19 5.95 -2.39 -0.01 4.17 15 24 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 25 H 0.40 16.99 8.66 -92.71 -0.80 16.18 15 26 H 0.20 4.48 8.06 -2.91 -0.02 4.45 15 27 H 0.20 4.15 8.06 -2.91 -0.02 4.12 15 Total: -1.00 -56.15 237.39 2.24 -53.91 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.37 Total: 20.88 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.46 Total: -15.58 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.62 Total: -104.68 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.00 Total: 2.30 kcal Total: -56.15 2.24 -53.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.046 kcal (2) G-P(sol) polarization free energy of solvation -56.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds