Wall clock time and date at job start Sun Mar 29 2020 21:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47350 * 2 1 4 4 H 1.08993 * 109.47419 * 54.44810 * 3 2 1 5 5 C 1.50697 * 109.46867 * 174.45111 * 3 2 1 6 6 H 1.08000 * 120.00622 * 25.65842 * 5 3 2 7 7 C 1.37885 * 119.99817 * 205.65958 * 5 3 2 8 8 N 1.31517 * 119.99739 * 353.26402 * 7 5 3 9 9 Si 1.86797 * 120.00155 * 173.26882 * 7 5 3 10 10 H 1.48506 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47346 * 119.99741 * 9 7 5 12 12 H 1.48497 * 109.47196 * 239.99946 * 9 7 5 13 13 N 1.46503 * 109.47275 * 294.44741 * 3 2 1 14 14 C 1.38608 * 119.99838 * 84.99744 * 13 3 2 15 15 N 1.29693 * 124.94920 * 180.02562 * 14 13 3 16 16 C 1.32116 * 116.86723 * 179.97438 * 15 14 13 17 17 C 1.33333 * 114.57873 * 359.97438 * 16 15 14 18 18 S 1.70967 * 124.95038 * 359.70094 * 14 13 3 19 19 H 1.09002 * 109.47072 * 59.99613 * 1 2 3 20 20 H 1.08989 * 109.47311 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46371 * 300.00634 * 1 2 3 22 22 H 1.08999 * 109.46594 * 240.00088 * 2 1 3 23 23 H 1.08996 * 109.46671 * 120.00413 * 2 1 3 24 24 H 0.96992 * 120.00350 * 354.66783 * 8 7 5 25 25 H 0.97000 * 119.99785 * 265.00504 * 13 3 2 26 26 H 1.07998 * 122.71096 * 180.02562 * 16 15 14 27 27 H 1.08004 * 125.94777 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5979 1.9842 0.8360 5 6 3.5408 1.4445 0.1374 6 1 4.1143 0.5896 -0.1893 7 6 4.1819 2.5380 0.6802 8 7 3.5016 3.6294 0.9554 9 14 6.0165 2.4692 1.0247 10 1 6.5449 1.1389 0.6291 11 1 6.7066 3.5281 0.2452 12 1 6.2565 2.6856 2.4741 13 7 1.6640 2.0934 -1.2574 14 6 0.4132 2.6761 -1.3890 15 7 -0.0187 3.2754 -2.4550 16 6 -1.2409 3.7746 -2.4055 17 6 -1.8698 3.5877 -1.2447 18 16 -0.7879 2.7025 -0.1726 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0275 -0.0005 21 1 -0.3632 0.5140 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.5665 3.6938 0.7059 25 1 2.2902 2.1166 -1.9978 26 1 -1.6944 4.2916 -3.2382 27 1 -2.8698 3.9178 -1.0050 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893187044.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:02 Heat of formation + Delta-G solvation = 32.153677 kcal Electronic energy + Delta-G solvation = -12211.436759 eV Core-core repulsion = 10095.604804 eV Total energy + Delta-G solvation = -2115.831956 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 212.068 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77548 -36.56080 -32.63565 -31.66278 -28.61396 -26.59080 -23.68173 -23.00088 -20.84162 -19.60472 -17.57457 -17.07978 -15.46003 -14.80513 -14.37486 -13.98921 -13.90925 -13.17307 -12.89438 -12.69836 -12.29917 -11.39162 -11.11918 -10.91438 -10.76839 -10.55642 -10.27221 -10.16599 -9.36257 -8.90771 -8.80349 -8.77895 -8.30150 -6.76968 -6.67797 -4.54348 1.80581 1.98939 2.59768 3.30789 3.32062 3.47329 3.72897 4.07626 4.31043 5.16468 5.54488 5.74618 5.79093 5.86828 5.95574 6.26907 6.42919 6.51694 6.59737 6.68908 6.89086 7.01518 7.59346 7.85388 8.10461 8.42475 8.55975 8.81066 9.26442 10.66360 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.042257 B = 0.010407 C = 0.009332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.455184 B = 2689.855146 C = 2999.560979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.123 4.123 3 C 0.239 3.761 4 H 0.049 0.951 5 C -0.604 4.604 6 H 0.062 0.938 7 C 0.032 3.968 8 N -0.881 5.881 9 Si 1.077 2.923 10 H -0.285 1.285 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.661 5.661 14 C 0.335 3.665 15 N -0.591 5.591 16 C 0.091 3.909 17 C -0.354 4.354 18 S 0.077 5.923 19 H 0.054 0.946 20 H 0.045 0.955 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.277 0.723 25 H 0.398 0.602 26 H 0.159 0.841 27 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 -3.124 -1.311 7.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.163 4.163 3 C 0.140 3.860 4 H 0.067 0.933 5 C -0.643 4.643 6 H 0.081 0.919 7 C -0.178 4.178 8 N -0.513 5.513 9 Si 0.904 3.096 10 H -0.211 1.211 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.298 5.298 14 C -0.037 4.037 15 N -0.320 5.320 16 C -0.060 4.060 17 C -0.496 4.496 18 S 0.323 5.677 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.236 0.764 26 H 0.176 0.824 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.538 -2.729 0.113 5.297 hybrid contribution -1.553 -0.225 -1.767 2.364 sum -6.091 -2.955 -1.654 6.969 Atomic orbital electron populations 1.22226 0.97482 1.00414 1.01840 1.21951 0.93829 0.99020 1.01474 1.19265 0.96228 0.88655 0.81880 0.93345 1.22119 0.90408 1.05308 1.46438 0.91930 1.26132 1.07034 0.91976 0.92657 1.70707 1.11831 1.27373 1.41371 0.83433 0.73420 0.75654 0.77124 1.21101 1.21143 1.20832 1.46858 1.08489 1.55747 1.18700 1.24247 0.93475 0.94181 0.91829 1.66560 1.15945 1.22689 1.26770 1.21213 0.89311 0.98419 0.97106 1.26298 1.06180 1.17859 0.99253 1.84066 1.08335 1.55189 1.20132 0.92745 0.93573 0.92565 0.92810 0.91525 0.91151 0.76390 0.82421 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.16 37.16 0.30 -2.55 15 2 C -0.12 -2.45 5.59 -26.73 -0.15 -2.60 15 3 C 0.24 5.53 1.71 -69.09 -0.12 5.41 15 4 H 0.05 1.22 6.25 -51.93 -0.32 0.89 15 5 C -0.60 -15.34 8.49 -34.44 -0.29 -15.64 15 6 H 0.06 1.57 7.82 -52.49 -0.41 1.16 15 7 C 0.03 0.84 5.45 -17.82 -0.10 0.75 15 8 N -0.88 -25.00 13.56 55.43 0.75 -24.25 15 9 Si 1.08 23.33 29.91 -169.99 -5.08 18.24 15 10 H -0.29 -5.85 7.11 56.52 0.40 -5.45 15 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 15 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 13 N -0.66 -14.93 5.11 -56.92 -0.29 -15.22 15 14 C 0.33 7.28 6.91 -87.68 -0.61 6.67 15 15 N -0.59 -12.70 10.60 -15.21 -0.16 -12.87 15 16 C 0.09 1.67 11.34 -19.14 -0.22 1.45 15 17 C -0.35 -6.09 11.34 29.02 0.33 -5.76 15 18 S 0.08 1.47 17.57 -107.50 -1.89 -0.42 15 19 H 0.05 1.02 5.24 -49.39 -0.26 0.76 15 20 H 0.05 0.71 8.14 -51.94 -0.42 0.28 15 21 H 0.06 0.97 6.87 -51.93 -0.36 0.62 15 22 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.28 7.97 6.93 -40.82 -0.28 7.69 15 25 H 0.40 9.08 8.72 -40.82 -0.36 8.73 15 26 H 0.16 2.33 8.06 -52.49 -0.42 1.91 15 27 H 0.16 2.23 8.06 -52.48 -0.42 1.80 15 LS Contribution 239.43 15.07 3.61 3.61 Total: -1.00 -27.87 239.43 -6.81 -34.69 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.90 Total: 8.49 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: -0.85 Total: -12.28 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.30 Total: -52.33 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.08 Total: 18.24 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.89 Total: -0.42 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.87 -6.81 -34.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893187044.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.840 kcal (2) G-P(sol) polarization free energy of solvation -27.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds