Wall clock time and date at job start Sun Mar 29 2020 21:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 5 5 C 1.50696 * 109.46997 * 64.99219 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.52996 * 109.47495 * 119.99724 * 2 1 3 14 14 N 1.46897 * 109.47615 * 295.00695 * 13 2 1 15 15 C 1.47481 * 111.00234 * 91.52008 * 14 13 2 16 16 C 1.53513 * 87.92862 * 138.70612 * 15 14 13 17 17 H 1.09001 * 114.17349 * 87.62785 * 16 15 14 18 18 C 1.53006 * 114.17017 * 220.13974 * 16 15 14 19 19 C 1.47479 * 111.00092 * 187.49406 * 14 13 2 20 20 H 1.09001 * 113.47372 * 106.52434 * 19 14 13 21 21 C 1.53002 * 113.47695 * 336.06178 * 19 14 13 22 22 H 1.09004 * 109.47510 * 59.99755 * 1 2 3 23 23 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 25 25 H 1.09005 * 109.46767 * 304.99570 * 4 2 1 26 26 H 1.09002 * 109.47113 * 184.99910 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 28 28 H 1.09010 * 109.46910 * 55.00408 * 13 2 1 29 29 H 1.08995 * 109.47577 * 174.99740 * 13 2 1 30 30 H 1.08998 * 113.47580 * 253.46878 * 15 14 13 31 31 H 1.08996 * 113.47526 * 23.88366 * 15 14 13 32 32 H 1.08997 * 109.46790 * 40.49514 * 18 16 15 33 33 H 1.08995 * 109.47352 * 160.49714 * 18 16 15 34 34 H 1.09001 * 109.46625 * 280.49587 * 18 16 15 35 35 H 1.08997 * 109.46822 * 79.50507 * 21 19 14 36 36 H 1.08999 * 109.46656 * 199.50389 * 21 19 14 37 37 H 1.09000 * 109.47021 * 319.50341 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4765 6 1 1.0804 0.9746 -2.3756 7 6 1.9922 -0.4020 -3.7284 8 7 1.6446 0.2774 -4.7994 9 14 2.9616 -1.9893 -3.9029 10 1 4.4152 -1.6868 -3.8790 11 1 2.6268 -2.9000 -2.7787 12 1 2.6131 -2.6429 -5.1901 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 0.3519 -0.4264 2.9665 16 6 0.9395 -0.3092 4.3799 17 1 0.8315 0.6787 4.8277 18 6 0.5382 -1.4464 5.3215 19 6 2.2754 -0.5286 3.6561 20 1 3.0884 0.0808 4.0509 21 6 2.6560 -2.0036 3.5129 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.6054 -1.7197 -1.2952 26 1 3.1263 -0.7993 -1.2056 27 1 1.8919 -0.0455 -5.6800 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2056 30 1 -0.4653 0.2696 2.7770 31 1 0.1093 -1.4496 2.6797 32 1 0.5580 -2.3915 4.7789 33 1 1.2384 -1.4917 6.1556 34 1 -0.4676 -1.2661 5.7008 35 1 3.5915 -2.0853 2.9595 36 1 2.7792 -2.4447 4.5020 37 1 1.8685 -2.5315 2.9751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894860271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:45 Heat of formation + Delta-G solvation = 15.877145 kcal Electronic energy + Delta-G solvation = -14568.908617 eV Core-core repulsion = 12346.710087 eV Total energy + Delta-G solvation = -2222.198530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71607 -35.50787 -32.45029 -31.07764 -29.67554 -27.70358 -26.73567 -24.11080 -23.60182 -21.34491 -18.93492 -18.20061 -16.72472 -16.38853 -15.30331 -14.99640 -14.11413 -14.03127 -13.31103 -13.02264 -12.78753 -12.40698 -12.27486 -12.16446 -12.02625 -11.74457 -11.36553 -11.28827 -10.94430 -10.70725 -10.51006 -10.34705 -9.95548 -9.82739 -9.60164 -9.28326 -9.02784 -8.54206 -8.48115 -5.98821 -3.95284 3.33106 3.40261 3.43960 4.17619 4.35517 4.49453 4.73288 5.14608 5.20328 5.27406 5.34200 5.36082 5.52866 5.57480 5.62535 5.70088 5.71485 5.82511 5.87759 6.01808 6.03152 6.12963 6.20621 6.35380 6.37220 6.57279 6.72661 6.85891 7.05442 7.13746 7.32894 7.37625 7.57655 7.86665 8.61695 9.07470 9.64264 11.14768 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054323 B = 0.006821 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.313202 B = 4103.984818 C = 4396.338896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 H 0.068 0.932 4 C -0.009 4.009 5 C -0.511 4.511 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 C 0.024 3.976 14 N -0.463 5.463 15 C 0.005 3.995 16 C -0.121 4.121 17 H 0.097 0.903 18 C -0.141 4.141 19 C 0.023 3.977 20 H 0.087 0.913 21 C -0.162 4.162 22 H 0.063 0.937 23 H 0.036 0.964 24 H 0.040 0.960 25 H 0.013 0.987 26 H 0.009 0.991 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.591 -4.671 18.498 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 H 0.086 0.914 4 C -0.047 4.047 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.215 1.215 13 C -0.105 4.105 14 N -0.185 5.185 15 C -0.124 4.124 16 C -0.140 4.140 17 H 0.115 0.885 18 C -0.199 4.199 19 C -0.086 4.086 20 H 0.106 0.894 21 C -0.220 4.220 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.461 -3.975 18.066 18.504 hybrid contribution 0.501 -1.720 -0.278 1.813 sum 0.040 -5.694 17.787 18.677 Atomic orbital electron populations 1.21793 0.96147 1.00238 1.00990 1.20933 0.95444 0.99847 0.92534 0.91353 1.19619 0.95442 0.96026 0.93611 1.21146 1.35214 1.09454 0.89086 0.90828 1.25031 0.95732 0.96887 0.95960 1.69920 1.47332 1.39298 0.97984 0.86808 0.80665 0.84573 0.77386 1.20387 1.19169 1.21494 1.22852 1.00350 0.95552 0.91708 1.69029 1.03535 1.45015 1.00897 1.23953 0.95074 0.99904 0.93467 1.22806 0.96460 0.99811 0.94876 0.88466 1.21708 1.01056 0.98019 0.99108 1.23287 0.97484 0.94795 0.93052 0.89438 1.22084 1.02001 0.95820 1.02075 0.91783 0.94456 0.94067 0.96914 0.97299 0.92870 0.94117 0.91506 0.89967 0.91507 0.92465 0.92525 0.92559 0.91993 0.91859 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.34 37.15 0.31 -2.32 16 2 C -0.07 -1.42 2.54 -90.62 -0.23 -1.65 16 3 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 5 C -0.51 -14.77 8.96 -34.44 -0.31 -15.08 16 6 H 0.07 2.29 7.30 -52.49 -0.38 1.90 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 9 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 13 C 0.02 0.40 3.49 -3.83 -0.01 0.39 16 14 N -0.46 -7.03 6.20 -236.46 -1.47 -8.49 16 15 C 0.00 0.06 5.29 -7.54 -0.04 0.02 16 16 C -0.12 -1.30 4.64 -90.09 -0.42 -1.72 16 17 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.14 -1.23 8.76 37.16 0.33 -0.91 16 19 C 0.02 0.29 4.69 -71.43 -0.34 -0.05 16 20 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 21 C -0.16 -1.79 7.02 37.16 0.26 -1.53 16 22 H 0.06 1.39 6.95 -51.93 -0.36 1.03 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.71 5.66 -51.92 -0.29 0.41 16 25 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 26 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 27 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.04 0.67 5.92 -51.92 -0.31 0.37 16 29 H 0.07 1.15 7.63 -51.93 -0.40 0.75 16 30 H 0.08 1.08 7.02 -51.93 -0.36 0.72 16 31 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 32 H 0.06 0.51 6.85 -51.93 -0.36 0.15 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.71 7.72 -51.93 -0.40 0.31 16 36 H 0.06 0.58 7.49 -51.93 -0.39 0.19 16 37 H 0.06 0.71 5.55 -51.93 -0.29 0.42 16 LS Contribution 277.71 15.07 4.18 4.18 Total: -1.00 -30.51 277.71 -8.17 -38.68 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.35 Total: -2.90 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -0.64 Total: -21.34 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.69 Total: -36.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.51 -8.17 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894860271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.561 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds