Wall clock time and date at job start Sun Mar 29 2020 21:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46819 * 2 1 4 4 C 1.53002 * 109.47320 * 240.00579 * 2 1 3 5 5 C 1.50696 * 109.46997 * 64.99219 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 C 1.52996 * 109.47495 * 119.99724 * 2 1 3 14 14 N 1.46897 * 109.47615 * 295.00695 * 13 2 1 15 15 C 1.47481 * 111.00234 * 91.52008 * 14 13 2 16 16 C 1.53513 * 87.92862 * 138.70612 * 15 14 13 17 17 H 1.09001 * 114.17349 * 87.62785 * 16 15 14 18 18 C 1.53006 * 114.17017 * 220.13974 * 16 15 14 19 19 C 1.47479 * 111.00092 * 187.49406 * 14 13 2 20 20 H 1.09001 * 113.47372 * 106.52434 * 19 14 13 21 21 C 1.53002 * 113.47695 * 336.06178 * 19 14 13 22 22 H 1.09004 * 109.47510 * 59.99755 * 1 2 3 23 23 H 1.09000 * 109.47181 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47216 * 299.99675 * 1 2 3 25 25 H 1.09005 * 109.46767 * 304.99570 * 4 2 1 26 26 H 1.09002 * 109.47113 * 184.99910 * 4 2 1 27 27 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 28 28 H 1.09010 * 109.46910 * 55.00408 * 13 2 1 29 29 H 1.08995 * 109.47577 * 174.99740 * 13 2 1 30 30 H 1.08998 * 113.47580 * 253.46878 * 15 14 13 31 31 H 1.08996 * 113.47526 * 23.88366 * 15 14 13 32 32 H 1.08997 * 109.46790 * 40.49514 * 18 16 15 33 33 H 1.08995 * 109.47352 * 160.49714 * 18 16 15 34 34 H 1.09001 * 109.46625 * 280.49587 * 18 16 15 35 35 H 1.08997 * 109.46822 * 79.50507 * 21 19 14 36 36 H 1.08999 * 109.46656 * 199.50389 * 21 19 14 37 37 H 1.09000 * 109.47021 * 319.50341 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4765 6 1 1.0804 0.9746 -2.3756 7 6 1.9922 -0.4020 -3.7284 8 7 1.6446 0.2774 -4.7994 9 14 2.9616 -1.9893 -3.9029 10 1 4.4152 -1.6868 -3.8790 11 1 2.6268 -2.9000 -2.7787 12 1 2.6131 -2.6429 -5.1901 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 0.3519 -0.4264 2.9665 16 6 0.9395 -0.3092 4.3799 17 1 0.8315 0.6787 4.8277 18 6 0.5382 -1.4464 5.3215 19 6 2.2754 -0.5286 3.6561 20 1 3.0884 0.0808 4.0509 21 6 2.6560 -2.0036 3.5129 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.6054 -1.7197 -1.2952 26 1 3.1263 -0.7993 -1.2056 27 1 1.8919 -0.0455 -5.6800 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2056 30 1 -0.4653 0.2696 2.7770 31 1 0.1093 -1.4496 2.6797 32 1 0.5580 -2.3915 4.7789 33 1 1.2384 -1.4917 6.1556 34 1 -0.4676 -1.2661 5.7008 35 1 3.5915 -2.0853 2.9595 36 1 2.7792 -2.4447 4.5020 37 1 1.8685 -2.5315 2.9751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894860271.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:45 Heat of formation + Delta-G solvation = -4.718866 kcal Electronic energy + Delta-G solvation = -14569.801727 eV Core-core repulsion = 12346.710087 eV Total energy + Delta-G solvation = -2223.091640 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.75668 -37.19106 -34.49668 -32.31627 -30.60888 -29.50304 -28.02955 -25.28920 -25.07326 -22.86015 -20.59789 -19.16911 -18.86872 -17.42252 -16.51917 -16.42631 -15.85710 -15.41185 -14.83627 -14.47350 -14.07061 -13.73299 -13.64035 -13.34746 -13.23500 -12.90902 -12.85282 -12.55674 -12.33318 -12.20734 -12.01794 -11.74273 -11.73673 -11.36970 -11.10180 -10.98759 -10.79308 -10.74976 -9.66550 -8.27472 -6.30132 1.34363 1.36057 1.48047 2.36475 3.07416 3.12772 3.44822 3.82509 4.03438 4.12394 4.31938 4.35598 4.43451 4.46598 4.58105 4.68069 4.70682 4.80708 4.82162 4.89289 4.92978 5.01905 5.04378 5.07573 5.23132 5.26396 5.32460 5.37333 5.51975 5.54189 5.56043 5.69631 5.72811 6.22806 6.34557 6.77136 7.33280 8.89560 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054323 B = 0.006821 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.313202 B = 4103.984818 C = 4396.338896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 H 0.044 0.956 4 C -0.005 4.005 5 C -0.520 4.520 6 H 0.031 0.969 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.247 1.247 12 H -0.284 1.284 13 C 0.038 3.962 14 N -0.488 5.488 15 C -0.001 4.001 16 C -0.106 4.106 17 H 0.100 0.900 18 C -0.137 4.137 19 C 0.022 3.978 20 H 0.089 0.911 21 C -0.158 4.158 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.034 -6.726 20.752 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.085 4.085 3 H 0.063 0.937 4 C -0.043 4.043 5 C -0.558 4.558 6 H 0.050 0.950 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.170 1.170 12 H -0.210 1.210 13 C -0.091 4.091 14 N -0.210 5.210 15 C -0.130 4.130 16 C -0.124 4.124 17 H 0.118 0.882 18 C -0.194 4.194 19 C -0.087 4.087 20 H 0.107 0.893 21 C -0.216 4.216 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.160 -6.026 20.348 21.222 hybrid contribution 0.253 -0.957 -0.961 1.380 sum 0.413 -6.983 19.387 20.611 Atomic orbital electron populations 1.21684 0.95447 1.00663 1.00396 1.20819 0.96044 0.98548 0.93134 0.93744 1.19559 0.95673 0.95798 0.93254 1.21444 1.34500 1.08573 0.91331 0.95019 1.26022 0.97001 1.01043 0.95422 1.70079 1.49088 1.41632 0.98732 0.85667 0.79157 0.79787 0.78079 1.19276 1.17029 1.20962 1.22580 1.00069 0.95490 0.90915 1.68985 1.05302 1.45545 1.01147 1.24031 0.94079 0.99834 0.95009 1.22739 0.94723 1.00915 0.94070 0.88192 1.21687 1.01925 0.96920 0.98916 1.23401 0.98240 0.95525 0.91564 0.89278 1.22055 1.01403 0.94836 1.03272 0.95166 0.93428 0.91806 0.96344 0.96825 0.92624 0.93160 0.91661 0.90485 0.91150 0.92412 0.91187 0.91673 0.92561 0.89629 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.34 71.98 0.60 -4.28 16 2 C -0.07 -2.75 2.54 -10.80 -0.03 -2.78 16 3 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 4 C 0.00 -0.24 3.52 29.85 0.10 -0.14 16 5 C -0.52 -30.94 8.96 25.60 0.23 -30.71 16 6 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 7 C 0.00 0.07 5.47 84.66 0.46 0.53 16 8 N -0.95 -61.43 13.96 21.45 0.30 -61.13 16 9 Si 0.95 45.34 27.47 68.60 1.88 47.23 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.04 1.24 3.49 86.30 0.30 1.54 16 14 N -0.49 -14.00 6.20 -902.02 -5.59 -19.59 16 15 C 0.00 -0.02 5.29 83.58 0.44 0.42 16 16 C -0.11 -1.98 4.64 -10.45 -0.05 -2.03 16 17 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.14 -1.90 8.76 71.98 0.63 -1.27 16 19 C 0.02 0.48 4.69 42.19 0.20 0.68 16 20 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 21 C -0.16 -3.01 7.02 71.98 0.51 -2.50 16 22 H 0.03 1.35 6.95 -2.39 -0.02 1.33 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 2.17 5.66 -2.38 -0.01 2.16 16 25 H 0.02 0.87 7.20 -2.38 -0.02 0.85 16 26 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 27 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.05 1.55 5.92 -2.38 -0.01 1.53 16 29 H 0.06 2.14 7.63 -2.39 -0.02 2.12 16 30 H 0.08 1.89 7.02 -2.39 -0.02 1.88 16 31 H 0.07 1.64 6.56 -2.39 -0.02 1.63 16 32 H 0.06 0.81 6.85 -2.39 -0.02 0.80 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.14 7.72 -2.39 -0.02 1.12 16 36 H 0.08 1.25 7.49 -2.39 -0.02 1.23 16 37 H 0.05 1.13 5.55 -2.39 -0.01 1.11 16 Total: -1.00 -66.76 277.71 0.95 -65.81 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 0.96 Total: 8.21 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.40 Total: -40.53 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -5.29 Total: -80.72 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.23 kcal Total: -66.76 0.95 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894860271.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.087 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds