Wall clock time and date at job start Sun Mar 29 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53001 * 109.46924 * 240.00383 * 2 1 3 5 5 C 1.50706 * 109.46969 * 65.00215 * 4 2 1 6 6 H 1.07992 * 119.99982 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47010 * 119.99977 * 9 7 5 12 12 H 1.48502 * 109.46978 * 239.99968 * 9 7 5 13 13 C 1.52997 * 109.47131 * 120.00465 * 2 1 3 14 14 N 1.46898 * 109.47315 * 294.99778 * 13 2 1 15 15 C 1.47486 * 110.99952 * 91.52613 * 14 13 2 16 16 C 1.53515 * 87.93048 * 138.70741 * 15 14 13 17 17 H 1.08998 * 114.17241 * 87.81609 * 16 15 14 18 18 C 1.53002 * 114.16603 * 220.32973 * 16 15 14 19 19 C 1.47480 * 111.00405 * 187.49978 * 14 13 2 20 20 H 1.09005 * 113.47310 * 336.06042 * 19 14 13 21 21 C 1.52992 * 113.47694 * 106.53094 * 19 14 13 22 22 H 1.09005 * 109.46684 * 299.99811 * 1 2 3 23 23 H 1.09004 * 109.47184 * 59.99606 * 1 2 3 24 24 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46953 * 185.00067 * 4 2 1 26 26 H 1.08997 * 109.46906 * 305.00080 * 4 2 1 27 27 H 0.97001 * 119.99550 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46952 * 175.00064 * 13 2 1 29 29 H 1.08994 * 109.47029 * 54.99828 * 13 2 1 30 30 H 1.09005 * 113.47586 * 253.47470 * 15 14 13 31 31 H 1.08997 * 113.47701 * 23.87649 * 15 14 13 32 32 H 1.09004 * 109.47379 * 40.49604 * 18 16 15 33 33 H 1.09004 * 109.46977 * 160.49435 * 18 16 15 34 34 H 1.09001 * 109.47226 * 280.49671 * 18 16 15 35 35 H 1.08990 * 109.47512 * 40.49886 * 21 19 14 36 36 H 1.09006 * 109.46852 * 160.50194 * 21 19 14 37 37 H 1.09005 * 109.46950 * 280.49339 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9932 -0.4014 -3.7283 8 7 2.6763 -1.5185 -3.8512 9 14 1.4984 0.5631 -5.2496 10 1 0.7400 1.7736 -4.8434 11 1 2.7163 0.9688 -5.9963 12 1 0.6450 -0.2866 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0372 2.4456 15 6 0.3519 -0.4265 2.9665 16 6 0.9396 -0.3093 4.3799 17 1 0.8286 0.6776 4.8290 18 6 0.5418 -1.4490 5.3201 19 6 2.2755 -0.5288 3.6561 20 1 2.5465 -1.5796 3.5540 21 6 3.4165 0.3265 4.2103 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7994 -1.2057 26 1 1.6053 -1.7197 -1.2952 27 1 2.9235 -1.8413 -4.7319 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7198 1.2950 30 1 -0.4653 0.2695 2.7769 31 1 0.1092 -1.4496 2.6795 32 1 0.5643 -2.3934 4.7762 33 1 1.2424 -1.4933 6.1540 34 1 -0.4645 -1.2723 5.6999 35 1 3.1453 1.3801 4.1460 36 1 3.5970 0.0606 5.2519 37 1 4.3205 0.1478 3.6279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894860272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:46 Heat of formation + Delta-G solvation = 7.008731 kcal Electronic energy + Delta-G solvation = -14364.335533 eV Core-core repulsion = 12141.752440 eV Total energy + Delta-G solvation = -2222.583093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28465 -35.38437 -32.48444 -30.91938 -30.05625 -27.11275 -26.70594 -23.75707 -22.93699 -21.56016 -19.63177 -18.63082 -16.33533 -15.33101 -15.23909 -14.84097 -14.39338 -13.77382 -13.26429 -13.09921 -12.61700 -12.48056 -12.32414 -11.84659 -11.65229 -11.49617 -11.34763 -11.18035 -10.87489 -10.74771 -10.48716 -10.25584 -10.10410 -9.90106 -9.62091 -9.04098 -8.92451 -8.51616 -8.30192 -5.94867 -3.95621 3.34038 3.41422 3.46038 4.22942 4.42018 4.51338 4.78279 5.31340 5.36082 5.40237 5.41368 5.42827 5.52346 5.66140 5.69735 5.81069 5.86184 5.93450 5.97006 6.01974 6.17722 6.19652 6.32812 6.41137 6.47462 6.66441 6.82662 7.04504 7.18750 7.24673 7.49276 7.73782 7.90087 8.05948 8.50525 9.11065 9.67677 11.16830 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060278 B = 0.005955 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.404938 B = 4701.051159 C = 4842.441910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.076 4.076 3 H 0.062 0.938 4 C 0.026 3.974 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.027 3.973 14 N -0.465 5.465 15 C 0.005 3.995 16 C -0.121 4.121 17 H 0.098 0.902 18 C -0.141 4.141 19 C 0.023 3.977 20 H 0.072 0.928 21 C -0.132 4.132 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.037 0.963 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.258 0.742 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.780 0.787 16.225 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.101 4.101 14 N -0.187 5.187 15 C -0.124 4.124 16 C -0.139 4.139 17 H 0.116 0.884 18 C -0.199 4.199 19 C -0.086 4.086 20 H 0.090 0.910 21 C -0.190 4.190 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.582 1.368 15.863 16.130 hybrid contribution -0.247 -0.551 -0.976 1.148 sum -2.829 0.818 14.887 15.175 Atomic orbital electron populations 1.21787 0.96591 1.00181 1.00442 1.21107 0.95078 0.99732 0.93563 0.91908 1.19138 0.96010 0.95380 0.90582 1.21286 1.34351 1.08233 0.90973 0.92516 1.25024 0.95371 0.95107 0.99097 1.69982 1.39300 1.21315 1.23207 0.86576 0.78255 0.80144 0.83287 1.19734 1.21087 1.21124 1.22841 1.00357 0.95207 0.91728 1.68930 1.03318 1.45452 1.00966 1.23910 0.95033 0.99908 0.93525 1.22856 0.96384 0.99828 0.94879 0.88401 1.21700 1.01160 0.97770 0.99222 1.23431 0.94896 0.97870 0.92426 0.91025 1.21600 0.97441 1.00364 0.99596 0.94303 0.92322 0.94388 0.96821 0.96848 0.93197 0.91560 0.94498 0.89982 0.91559 0.92749 0.92520 0.92472 0.91821 0.92633 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.34 37.16 0.31 -2.33 16 2 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.63 8.41 -34.44 -0.29 -14.92 16 6 H 0.06 1.60 7.05 -52.49 -0.37 1.23 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.72 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.03 0.49 4.37 -3.83 -0.02 0.47 16 14 N -0.46 -7.33 5.99 -236.43 -1.42 -8.75 16 15 C 0.01 0.07 5.59 -7.53 -0.04 0.03 16 16 C -0.12 -1.36 4.23 -90.09 -0.38 -1.74 16 17 H 0.10 1.07 8.12 -51.93 -0.42 0.65 16 18 C -0.14 -1.30 9.73 37.16 0.36 -0.94 16 19 C 0.02 0.30 3.29 -71.43 -0.23 0.07 16 20 H 0.07 0.93 7.87 -51.93 -0.41 0.53 16 21 C -0.13 -1.55 9.93 37.15 0.37 -1.18 16 22 H 0.04 0.68 5.66 -51.93 -0.29 0.38 16 23 H 0.06 1.25 6.95 -51.93 -0.36 0.89 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 29 H 0.04 0.67 7.35 -51.93 -0.38 0.29 16 30 H 0.08 1.11 7.02 -51.93 -0.36 0.74 16 31 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 32 H 0.05 0.52 8.03 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 291.57 15.07 4.39 4.39 Total: -1.00 -30.08 291.57 -8.44 -38.52 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -6.76 Total: -4.14 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -0.38 Total: -20.35 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.68 Total: -35.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.08 -8.44 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894860272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.533 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds