Wall clock time and date at job start Sun Mar 29 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47210 * 2 1 4 4 C 1.53001 * 109.46924 * 240.00383 * 2 1 3 5 5 C 1.50706 * 109.46969 * 65.00215 * 4 2 1 6 6 H 1.07992 * 119.99982 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99734 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99960 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47058 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47010 * 119.99977 * 9 7 5 12 12 H 1.48502 * 109.46978 * 239.99968 * 9 7 5 13 13 C 1.52997 * 109.47131 * 120.00465 * 2 1 3 14 14 N 1.46898 * 109.47315 * 294.99778 * 13 2 1 15 15 C 1.47486 * 110.99952 * 91.52613 * 14 13 2 16 16 C 1.53515 * 87.93048 * 138.70741 * 15 14 13 17 17 H 1.08998 * 114.17241 * 87.81609 * 16 15 14 18 18 C 1.53002 * 114.16603 * 220.32973 * 16 15 14 19 19 C 1.47480 * 111.00405 * 187.49978 * 14 13 2 20 20 H 1.09005 * 113.47310 * 336.06042 * 19 14 13 21 21 C 1.52992 * 113.47694 * 106.53094 * 19 14 13 22 22 H 1.09005 * 109.46684 * 299.99811 * 1 2 3 23 23 H 1.09004 * 109.47184 * 59.99606 * 1 2 3 24 24 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46953 * 185.00067 * 4 2 1 26 26 H 1.08997 * 109.46906 * 305.00080 * 4 2 1 27 27 H 0.97001 * 119.99550 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.46952 * 175.00064 * 13 2 1 29 29 H 1.08994 * 109.47029 * 54.99828 * 13 2 1 30 30 H 1.09005 * 113.47586 * 253.47470 * 15 14 13 31 31 H 1.08997 * 113.47701 * 23.87649 * 15 14 13 32 32 H 1.09004 * 109.47379 * 40.49604 * 18 16 15 33 33 H 1.09004 * 109.46977 * 160.49435 * 18 16 15 34 34 H 1.09001 * 109.47226 * 280.49671 * 18 16 15 35 35 H 1.08990 * 109.47512 * 40.49886 * 21 19 14 36 36 H 1.09006 * 109.46852 * 160.50194 * 21 19 14 37 37 H 1.09005 * 109.46950 * 280.49339 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9932 -0.4014 -3.7283 8 7 2.6763 -1.5185 -3.8512 9 14 1.4984 0.5631 -5.2496 10 1 0.7400 1.7736 -4.8434 11 1 2.7163 0.9688 -5.9963 12 1 0.6450 -0.2866 -6.1186 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0372 2.4456 15 6 0.3519 -0.4265 2.9665 16 6 0.9396 -0.3093 4.3799 17 1 0.8286 0.6776 4.8290 18 6 0.5418 -1.4490 5.3201 19 6 2.2755 -0.5288 3.6561 20 1 2.5465 -1.5796 3.5540 21 6 3.4165 0.3265 4.2103 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7994 -1.2057 26 1 1.6053 -1.7197 -1.2952 27 1 2.9235 -1.8413 -4.7319 28 1 3.1263 -0.7995 1.2055 29 1 1.6054 -1.7198 1.2950 30 1 -0.4653 0.2695 2.7769 31 1 0.1092 -1.4496 2.6795 32 1 0.5643 -2.3934 4.7762 33 1 1.2424 -1.4933 6.1540 34 1 -0.4645 -1.2723 5.6999 35 1 3.1453 1.3801 4.1460 36 1 3.5970 0.0606 5.2519 37 1 4.3205 0.1478 3.6279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894860272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:46 Heat of formation + Delta-G solvation = -12.054763 kcal Electronic energy + Delta-G solvation = -14365.162188 eV Core-core repulsion = 12141.752440 eV Total energy + Delta-G solvation = -2223.409748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.41299 -37.15121 -34.51148 -32.16207 -31.09143 -28.90390 -28.18796 -25.51440 -24.12193 -22.96916 -20.97752 -20.04350 -18.51527 -16.74531 -16.56422 -16.21542 -15.97956 -15.17473 -14.58849 -14.37619 -14.19380 -13.92044 -13.42540 -13.39789 -13.11011 -12.82854 -12.73700 -12.50460 -12.45903 -12.35417 -12.11817 -11.87344 -11.70199 -11.40652 -11.07698 -10.91568 -10.75727 -10.55888 -9.75953 -8.19336 -6.28786 1.38801 1.39016 1.52611 2.40823 3.10005 3.13899 3.45756 3.80067 4.04096 4.16950 4.36960 4.42428 4.45563 4.54903 4.56426 4.64808 4.70504 4.80584 4.86614 4.93642 4.99313 5.02287 5.07746 5.20907 5.23086 5.31043 5.40594 5.44450 5.50718 5.54522 5.59538 5.79085 5.86864 6.19488 6.31274 6.86810 7.39629 8.93113 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.060278 B = 0.005955 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.404938 B = 4701.051159 C = 4842.441910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.068 4.068 3 H 0.049 0.951 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.040 3.960 14 N -0.481 5.481 15 C -0.001 4.001 16 C -0.102 4.102 17 H 0.106 0.894 18 C -0.137 4.137 19 C 0.018 3.982 20 H 0.071 0.929 21 C -0.129 4.129 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.038 0.962 25 H -0.015 1.015 26 H -0.011 1.011 27 H 0.262 0.738 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 1.549 17.433 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.187 1.187 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.089 4.089 14 N -0.204 5.204 15 C -0.130 4.130 16 C -0.120 4.120 17 H 0.124 0.876 18 C -0.195 4.195 19 C -0.091 4.091 20 H 0.089 0.911 21 C -0.187 4.187 22 H 0.084 0.916 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.003 0.997 26 H 0.008 0.992 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.566 2.136 17.089 17.587 hybrid contribution 0.083 -0.807 -1.310 1.541 sum -3.483 1.329 15.779 16.213 Atomic orbital electron populations 1.21672 0.94985 1.00379 1.00880 1.20912 0.96325 0.98489 0.92964 0.93199 1.19022 0.94055 0.94587 0.92821 1.21649 1.34428 1.08520 0.92097 0.92276 1.25965 0.95185 0.96111 1.02675 1.70111 1.40333 1.22977 1.24271 0.85430 0.78130 0.78857 0.78841 1.18651 1.20422 1.20330 1.22555 0.99450 0.95021 0.91862 1.68919 1.05204 1.45443 1.00794 1.24005 0.94114 0.99800 0.95096 1.22781 0.94136 1.01137 0.93990 0.87557 1.21682 1.02271 0.96495 0.99009 1.23564 0.96327 0.97930 0.91260 0.91112 1.21594 0.96445 0.99782 1.00869 0.91557 0.94052 0.94283 0.99700 0.99228 0.92885 0.92749 0.94528 0.89758 0.91671 0.93185 0.91145 0.91189 0.92340 0.90125 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.80 8.34 71.98 0.60 -4.20 16 2 C -0.07 -2.98 2.55 -10.79 -0.03 -3.00 16 3 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.03 1.79 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.92 8.41 25.60 0.22 -30.70 16 6 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 9 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 10 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 C 0.04 1.47 4.37 86.30 0.38 1.85 16 14 N -0.48 -14.71 5.99 -901.94 -5.40 -20.11 16 15 C 0.00 -0.04 5.59 83.58 0.47 0.43 16 16 C -0.10 -2.02 4.23 -10.45 -0.04 -2.07 16 17 H 0.11 1.98 8.12 -2.39 -0.02 1.97 16 18 C -0.14 -2.10 9.73 71.98 0.70 -1.40 16 19 C 0.02 0.44 3.29 42.19 0.14 0.58 16 20 H 0.07 1.75 7.87 -2.38 -0.02 1.73 16 21 C -0.13 -2.81 9.93 71.98 0.71 -2.09 16 22 H 0.07 2.22 5.66 -2.38 -0.01 2.21 16 23 H 0.04 1.74 6.95 -2.38 -0.02 1.72 16 24 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 25 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 26 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 28 H 0.05 2.10 8.11 -2.39 -0.02 2.08 16 29 H 0.04 1.34 7.35 -2.39 -0.02 1.32 16 30 H 0.08 2.08 7.02 -2.38 -0.02 2.06 16 31 H 0.07 1.68 7.33 -2.39 -0.02 1.66 16 32 H 0.05 0.82 8.03 -2.38 -0.02 0.80 16 33 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -64.94 291.57 1.65 -63.29 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.00 Total: 5.78 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 3.74 Total: -38.35 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -5.12 Total: -78.16 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -64.94 1.65 -63.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894860272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.239 kcal (2) G-P(sol) polarization free energy of solvation -64.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds