Wall clock time and date at job start Sun Mar 29 2020 21:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47380 * 269.99866 * 3 2 1 5 5 H 1.48497 * 109.47178 * 30.00437 * 3 2 1 6 6 H 1.48506 * 109.46980 * 150.00358 * 3 2 1 7 7 C 1.37879 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99966 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99902 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00164 * 0.02562 * 11 10 9 13 13 C 1.50704 * 119.99661 * 179.72251 * 11 10 9 14 14 H 1.09001 * 115.54482 * 56.69483 * 13 11 10 15 15 C 1.52999 * 117.49802 * 202.35620 * 13 11 10 16 16 C 1.52998 * 117.50243 * 270.98110 * 13 11 10 17 17 H 1.09000 * 117.49969 * 145.02173 * 16 13 11 18 18 C 1.50698 * 117.49824 * 0.02562 * 16 13 11 19 19 N 1.34776 * 120.00100 * 143.67937 * 18 16 13 20 20 O 1.21283 * 120.00010 * 323.68130 * 18 16 13 21 21 H 0.97005 * 119.99444 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47268 * 59.99728 * 9 7 2 23 23 H 1.09005 * 109.47421 * 300.00225 * 9 7 2 24 24 H 0.96996 * 119.99701 * 0.02562 * 10 9 7 25 25 H 1.08997 * 117.49937 * 214.98349 * 15 13 11 26 26 H 1.09001 * 117.49961 * 0.02562 * 15 13 11 27 27 H 0.97002 * 119.99488 * 359.97438 * 19 18 16 28 28 H 0.96995 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5755 -0.0010 11 6 5.3248 -2.8218 -0.0020 12 8 6.1130 -1.9000 -0.0025 13 6 5.8271 -4.2426 0.0045 14 1 5.4732 -4.8700 -0.8137 15 6 7.2467 -4.4878 0.5195 16 6 6.0429 -4.9096 1.3644 17 1 5.8308 -5.9760 1.4414 18 6 5.7364 -4.0955 2.5950 19 7 5.1969 -4.6887 3.6783 20 8 5.9753 -2.9065 2.6107 21 1 -0.4849 0.8401 -0.0004 22 1 3.8752 -0.6805 0.8888 23 1 3.8746 -0.6801 -0.8911 24 1 3.3694 -3.3126 -0.0010 25 1 7.8267 -5.2767 0.0406 26 1 7.8173 -3.6214 0.8541 27 1 5.0055 -5.6396 3.6656 28 1 4.9993 -4.1647 4.4703 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907803658.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:16 Heat of formation + Delta-G solvation = -87.341425 kcal Electronic energy + Delta-G solvation = -13970.330783 eV Core-core repulsion = 11406.564259 eV Total energy + Delta-G solvation = -2563.766523 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43212 -39.80736 -36.92206 -36.05581 -34.60476 -34.39374 -30.18506 -26.24453 -25.20452 -23.33867 -21.54791 -20.91511 -19.38635 -18.40971 -18.06693 -17.04564 -16.91452 -16.37327 -15.96965 -15.51549 -15.24224 -15.02450 -14.52737 -14.05642 -13.93092 -13.14423 -12.92517 -12.74050 -11.99651 -11.70576 -11.60474 -11.55498 -11.09987 -10.94710 -10.74381 -10.61697 -9.89625 -8.44040 -6.49970 1.26587 1.28677 1.29366 1.44353 1.91149 2.24748 2.34958 2.62437 2.90802 2.98280 3.69593 3.77535 3.94707 4.12256 4.36077 4.72408 4.82235 4.88130 4.99348 5.15689 5.23403 5.56021 5.89872 6.07108 6.49684 6.51258 6.87713 7.13691 7.40321 7.49893 8.70624 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.040082 B = 0.008304 C = 0.007898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.396430 B = 3370.959400 C = 3544.283149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.031 3.969 3 Si 0.933 3.067 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.237 3.763 10 N -0.703 5.703 11 C 0.524 3.476 12 O -0.590 6.590 13 C -0.165 4.165 14 H 0.179 0.821 15 C -0.110 4.110 16 C -0.158 4.158 17 H 0.188 0.812 18 C 0.517 3.483 19 N -0.831 5.831 20 O -0.587 6.587 21 H 0.273 0.727 22 H -0.004 1.004 23 H 0.008 0.992 24 H 0.406 0.594 25 H 0.162 0.838 26 H 0.074 0.926 27 H 0.421 0.579 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -16.087 3.553 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.113 3.887 10 N -0.352 5.352 11 C 0.312 3.688 12 O -0.471 6.471 13 C -0.186 4.186 14 H 0.196 0.804 15 C -0.147 4.147 16 C -0.179 4.179 17 H 0.205 0.795 18 C 0.303 3.697 19 N -0.395 5.395 20 O -0.467 6.467 21 H 0.083 0.917 22 H 0.014 0.986 23 H 0.026 0.974 24 H 0.242 0.758 25 H 0.179 0.821 26 H 0.092 0.908 27 H 0.253 0.747 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 11.356 -14.583 3.401 18.793 hybrid contribution -0.598 0.716 0.490 1.053 sum 10.758 -13.868 3.890 17.977 Atomic orbital electron populations 1.69966 1.07378 1.28595 1.50662 1.25518 0.95540 1.02347 0.93566 0.85932 0.78933 0.79835 0.79636 1.18453 1.19248 1.19846 1.21258 0.89613 0.94717 1.52602 0.91925 1.18977 0.93536 0.81418 0.94754 1.45864 1.06688 1.09205 1.73480 1.20445 0.81944 0.91466 0.74963 1.90600 1.56594 1.48151 1.51733 1.22365 1.03786 0.92920 0.99544 0.80388 1.23111 0.89083 1.03489 0.99065 1.22554 1.06087 1.01896 0.87365 0.79492 1.20426 0.76418 0.87137 0.85730 1.43586 1.64990 1.14815 1.16077 1.90893 1.54201 1.18110 1.83446 0.91736 0.98617 0.97434 0.75832 0.82053 0.90760 0.74670 0.76536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.96 21.45 0.30 -56.42 15 2 C 0.03 1.83 5.47 84.65 0.46 2.29 15 3 Si 0.93 46.90 27.47 68.60 1.88 48.79 15 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 15 5 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.27 -14.30 6.54 99.48 0.65 -13.65 15 7 C -0.54 -31.74 9.83 25.60 0.25 -31.49 15 8 H 0.06 3.76 7.84 -2.91 -0.02 3.74 15 9 C 0.24 12.89 4.50 85.63 0.38 13.28 15 10 N -0.70 -31.12 5.55 -466.77 -2.59 -33.70 15 11 C 0.52 21.88 5.50 87.66 0.48 22.36 15 12 O -0.59 -30.69 16.03 7.78 0.12 -30.56 15 13 C -0.17 -4.18 6.18 -11.54 -0.07 -4.25 15 14 H 0.18 2.91 8.14 -2.39 -0.02 2.89 15 15 C -0.11 -2.35 9.58 30.59 0.29 -2.05 15 16 C -0.16 -3.06 6.19 -11.54 -0.07 -3.13 15 17 H 0.19 1.35 8.14 -2.39 -0.02 1.33 15 18 C 0.52 14.67 7.56 87.66 0.66 15.34 15 19 N -0.83 -15.01 8.87 -173.53 -1.54 -16.55 15 20 O -0.59 -25.25 15.35 7.78 0.12 -25.13 15 21 H 0.27 15.53 8.31 -92.70 -0.77 14.76 15 22 H 0.00 -0.24 7.20 -2.39 -0.02 -0.26 15 23 H 0.01 0.43 7.57 -2.38 -0.02 0.42 15 24 H 0.41 15.47 8.32 -92.71 -0.77 14.70 15 25 H 0.16 1.78 8.14 -2.39 -0.02 1.76 15 26 H 0.07 2.26 7.72 -2.39 -0.02 2.25 15 27 H 0.42 3.60 8.83 -92.71 -0.82 2.78 15 28 H 0.40 7.45 8.93 -92.71 -0.83 6.62 15 Total: -1.00 -87.08 251.94 -0.57 -87.65 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -1.26 Total: 13.60 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 2.40 Total: 12.34 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -3.83 Total: -106.68 kcal Atomic # 8 Polarization: -55.94 SS G_CDS: 0.24 Total: -55.69 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.88 Total: 48.79 kcal Total: -87.08 -0.57 -87.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803658.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.306 kcal (2) G-P(sol) polarization free energy of solvation -87.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds