Wall clock time and date at job start Sun Mar 29 2020 21:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47288 * 2 1 4 4 C 1.46901 * 111.00154 * 297.88241 * 3 2 1 5 5 C 1.50698 * 109.46946 * 288.63605 * 4 3 2 6 6 H 1.08000 * 119.99948 * 358.47415 * 5 4 3 7 7 C 1.37876 * 119.99780 * 178.47213 * 5 4 3 8 8 N 1.31519 * 120.00179 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00130 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47249 * 90.00014 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99862 * 9 7 5 12 12 H 1.48495 * 109.47477 * 330.00165 * 9 7 5 13 13 C 1.46905 * 110.99692 * 61.83751 * 3 2 1 14 14 C 1.52995 * 109.47338 * 66.04816 * 13 3 2 15 15 C 1.53782 * 113.61600 * 175.00117 * 14 13 3 16 16 C 1.53777 * 87.08211 * 140.06175 * 15 14 13 17 17 C 1.52999 * 113.61102 * 89.11713 * 16 15 14 18 18 C 1.53777 * 87.17384 * 334.52410 * 16 15 14 19 19 H 1.08998 * 109.47117 * 302.88295 * 1 2 3 20 20 H 1.08999 * 109.47169 * 62.87943 * 1 2 3 21 21 H 1.09000 * 109.46934 * 182.87372 * 1 2 3 22 22 H 1.08999 * 109.47258 * 239.99858 * 2 1 3 23 23 H 1.09006 * 109.47110 * 120.00154 * 2 1 3 24 24 H 1.09005 * 109.46742 * 48.63631 * 4 3 2 25 25 H 1.08999 * 109.46914 * 168.63699 * 4 3 2 26 26 H 0.96993 * 120.00031 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.47101 * 306.04083 * 13 3 2 28 28 H 1.09003 * 109.46505 * 186.04682 * 13 3 2 29 29 H 1.08994 * 112.84888 * 43.79863 * 14 13 3 30 30 H 1.09008 * 113.61173 * 25.51040 * 15 14 13 31 31 H 1.09003 * 113.69083 * 254.62611 * 15 14 13 32 32 H 1.09000 * 113.61181 * 219.93618 * 16 15 14 33 33 H 1.08996 * 109.47281 * 61.53366 * 17 16 15 34 34 H 1.08998 * 109.47405 * 301.52017 * 17 16 15 35 35 H 1.09008 * 109.46879 * 181.52738 * 17 16 15 36 36 H 1.09003 * 113.61353 * 140.02465 * 18 16 15 37 37 H 1.08999 * 113.61461 * 270.92282 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5905 2.0951 -1.2122 5 6 2.3527 1.5670 -2.4001 6 1 3.1004 0.7996 -2.2643 7 6 2.0954 2.0635 -3.6604 8 7 2.7602 1.6023 -4.6973 9 14 0.8016 3.3902 -3.8955 10 1 1.4351 4.7274 -3.7688 11 1 0.1942 3.2560 -5.2439 12 1 -0.2530 3.2422 -2.8606 13 6 1.5849 2.0970 1.2091 14 6 2.2540 1.4744 2.4361 15 6 1.9599 2.2251 3.7456 16 6 1.8412 0.8469 4.4172 17 6 3.1686 0.3130 4.9593 18 6 1.4721 0.2886 3.0327 19 1 -0.3633 0.5579 0.8630 20 1 -0.3633 0.4685 -0.9147 21 1 -0.3633 -1.0264 0.0515 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.5229 1.9382 -1.3664 25 1 1.7884 3.1609 -1.0981 26 1 2.5794 1.9518 -5.5838 27 1 0.5020 2.0192 1.3070 28 1 1.8684 3.1469 1.1342 29 1 3.3124 1.2656 2.2807 30 1 1.0243 2.7842 3.7277 31 1 2.7998 2.8172 4.1091 32 1 1.0311 0.7835 5.1436 33 1 3.5480 0.9912 5.7237 34 1 3.8908 0.2414 4.1461 35 1 3.0126 -0.6741 5.3945 36 1 1.9194 -0.6824 2.8200 37 1 0.4035 0.3191 2.8203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929775294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:25 Heat of formation + Delta-G solvation = 14.128167 kcal Electronic energy + Delta-G solvation = -14637.838087 eV Core-core repulsion = 12415.563716 eV Total energy + Delta-G solvation = -2222.274371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51413 -36.68818 -32.49917 -30.34966 -29.56646 -27.54007 -25.54963 -24.96430 -23.09301 -21.44427 -19.08877 -18.41831 -16.70037 -15.69916 -15.12476 -14.78316 -14.22401 -14.08539 -13.46308 -13.04635 -12.60656 -12.40365 -12.33756 -12.04819 -11.80024 -11.57176 -11.45698 -11.07819 -10.80432 -10.61198 -10.43939 -10.31334 -10.16796 -9.86000 -9.81559 -9.43495 -9.20680 -8.51745 -7.20963 -6.00561 -3.96483 3.30393 3.37736 3.39607 4.45509 4.63132 4.68668 4.87441 4.91107 5.14169 5.31842 5.44796 5.63561 5.68958 5.74622 5.81464 5.86899 5.87867 5.94066 5.98745 6.06676 6.09599 6.17574 6.26260 6.31613 6.43134 6.51686 6.57995 6.78291 6.88169 7.00922 7.13058 7.69492 8.01137 8.17245 8.73949 9.09781 9.62088 11.12950 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051314 B = 0.007108 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.529378 B = 3938.447864 C = 4004.540044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.524 5.524 4 C 0.155 3.845 5 C -0.502 4.502 6 H 0.080 0.920 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.057 3.943 14 C -0.097 4.097 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.134 4.134 18 C -0.133 4.133 19 H 0.047 0.953 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.062 0.938 24 H -0.004 1.004 25 H 0.019 0.981 26 H 0.262 0.738 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.691 -1.086 16.355 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.071 4.071 3 N -0.247 5.247 4 C 0.029 3.971 5 C -0.541 4.541 6 H 0.098 0.902 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.072 4.072 14 C -0.116 4.116 15 C -0.172 4.172 16 C -0.136 4.136 17 C -0.191 4.191 18 C -0.170 4.170 19 H 0.066 0.934 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.098 0.902 23 H 0.080 0.920 24 H 0.014 0.986 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.150 -1.072 16.142 16.481 hybrid contribution -1.637 0.817 -0.352 1.863 sum -4.787 -0.255 15.790 16.502 Atomic orbital electron populations 1.22423 0.99832 1.00908 1.01686 1.22072 0.91743 0.91342 1.01975 1.62182 1.58987 1.01849 1.01635 1.20251 0.94511 0.93784 0.88530 1.21051 1.21149 1.22578 0.89302 0.90234 1.24898 0.96025 0.96538 0.95978 1.69897 1.41796 1.43422 0.99123 0.86897 0.82683 0.82887 0.77490 1.20227 1.21281 1.19349 1.22129 0.96470 0.97922 0.90630 1.22564 1.00545 0.95701 0.92791 1.23004 1.01497 0.95901 0.96810 1.22298 0.97807 0.97028 0.96511 1.21580 0.96339 1.00322 1.00830 1.23189 1.00228 0.98426 0.95149 0.93408 0.92030 0.93287 0.90153 0.91964 0.98647 0.96324 0.92778 0.95446 0.91729 0.88617 0.90585 0.91736 0.91374 0.92754 0.92163 0.92800 0.91508 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.30 9.22 37.16 0.34 -2.95 16 2 C 0.06 1.09 5.42 -3.83 -0.02 1.07 16 3 N -0.52 -11.04 4.66 -236.06 -1.10 -12.14 16 4 C 0.16 3.82 3.66 -4.98 -0.02 3.81 16 5 C -0.50 -14.47 9.08 -34.44 -0.31 -14.79 16 6 H 0.08 2.50 7.77 -52.49 -0.41 2.10 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 9 Si 0.87 21.81 27.50 -169.99 -4.67 17.14 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.48 6.50 56.52 0.37 -6.11 16 13 C 0.06 0.99 4.66 -3.82 -0.02 0.97 16 14 C -0.10 -1.39 3.10 -89.67 -0.28 -1.66 16 15 C -0.13 -1.59 7.23 -25.92 -0.19 -1.78 16 16 C -0.12 -1.29 4.54 -89.81 -0.41 -1.70 16 17 C -0.13 -1.33 9.58 37.16 0.36 -0.97 16 18 C -0.13 -1.67 5.47 -25.78 -0.14 -1.81 16 19 H 0.05 0.76 5.09 -51.93 -0.26 0.50 16 20 H 0.06 1.21 6.37 -51.93 -0.33 0.88 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.08 1.74 7.22 -51.93 -0.38 1.37 16 23 H 0.06 1.05 5.25 -51.93 -0.27 0.77 16 24 H 0.00 -0.10 4.87 -51.93 -0.25 -0.35 16 25 H 0.02 0.46 7.33 -51.93 -0.38 0.08 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 27 H 0.03 0.47 5.71 -51.93 -0.30 0.17 16 28 H 0.06 1.13 7.87 -51.93 -0.41 0.73 16 29 H 0.10 1.47 7.64 -51.93 -0.40 1.08 16 30 H 0.08 0.87 8.10 -51.92 -0.42 0.45 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.64 7.33 -51.93 -0.38 0.26 16 35 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.85 7.22 -51.93 -0.37 0.47 16 37 H 0.08 0.98 6.84 -51.93 -0.36 0.63 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -29.98 277.85 -7.79 -37.77 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.20 Total: -1.75 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -0.78 Total: -17.98 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: -0.33 Total: -39.37 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.98 -7.79 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.902 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds