Wall clock time and date at job start Sun Mar 29 2020 21:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47288 * 2 1 4 4 C 1.46901 * 111.00154 * 297.88241 * 3 2 1 5 5 C 1.50698 * 109.46946 * 288.63605 * 4 3 2 6 6 H 1.08000 * 119.99948 * 358.47415 * 5 4 3 7 7 C 1.37876 * 119.99780 * 178.47213 * 5 4 3 8 8 N 1.31519 * 120.00179 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00130 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47249 * 90.00014 * 9 7 5 11 11 H 1.48499 * 109.47472 * 209.99862 * 9 7 5 12 12 H 1.48495 * 109.47477 * 330.00165 * 9 7 5 13 13 C 1.46905 * 110.99692 * 61.83751 * 3 2 1 14 14 C 1.52995 * 109.47338 * 66.04816 * 13 3 2 15 15 C 1.53782 * 113.61600 * 175.00117 * 14 13 3 16 16 C 1.53777 * 87.08211 * 140.06175 * 15 14 13 17 17 C 1.52999 * 113.61102 * 89.11713 * 16 15 14 18 18 C 1.53777 * 87.17384 * 334.52410 * 16 15 14 19 19 H 1.08998 * 109.47117 * 302.88295 * 1 2 3 20 20 H 1.08999 * 109.47169 * 62.87943 * 1 2 3 21 21 H 1.09000 * 109.46934 * 182.87372 * 1 2 3 22 22 H 1.08999 * 109.47258 * 239.99858 * 2 1 3 23 23 H 1.09006 * 109.47110 * 120.00154 * 2 1 3 24 24 H 1.09005 * 109.46742 * 48.63631 * 4 3 2 25 25 H 1.08999 * 109.46914 * 168.63699 * 4 3 2 26 26 H 0.96993 * 120.00031 * 180.02562 * 8 7 5 27 27 H 1.09005 * 109.47101 * 306.04083 * 13 3 2 28 28 H 1.09003 * 109.46505 * 186.04682 * 13 3 2 29 29 H 1.08994 * 112.84888 * 43.79863 * 14 13 3 30 30 H 1.09008 * 113.61173 * 25.51040 * 15 14 13 31 31 H 1.09003 * 113.69083 * 254.62611 * 15 14 13 32 32 H 1.09000 * 113.61181 * 219.93618 * 16 15 14 33 33 H 1.08996 * 109.47281 * 61.53366 * 17 16 15 34 34 H 1.08998 * 109.47405 * 301.52017 * 17 16 15 35 35 H 1.09008 * 109.46879 * 181.52738 * 17 16 15 36 36 H 1.09003 * 113.61353 * 140.02465 * 18 16 15 37 37 H 1.08999 * 113.61461 * 270.92282 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5905 2.0951 -1.2122 5 6 2.3527 1.5670 -2.4001 6 1 3.1004 0.7996 -2.2643 7 6 2.0954 2.0635 -3.6604 8 7 2.7602 1.6023 -4.6973 9 14 0.8016 3.3902 -3.8955 10 1 1.4351 4.7274 -3.7688 11 1 0.1942 3.2560 -5.2439 12 1 -0.2530 3.2422 -2.8606 13 6 1.5849 2.0970 1.2091 14 6 2.2540 1.4744 2.4361 15 6 1.9599 2.2251 3.7456 16 6 1.8412 0.8469 4.4172 17 6 3.1686 0.3130 4.9593 18 6 1.4721 0.2886 3.0327 19 1 -0.3633 0.5579 0.8630 20 1 -0.3633 0.4685 -0.9147 21 1 -0.3633 -1.0264 0.0515 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 0.5229 1.9382 -1.3664 25 1 1.7884 3.1609 -1.0981 26 1 2.5794 1.9518 -5.5838 27 1 0.5020 2.0192 1.3070 28 1 1.8684 3.1469 1.1342 29 1 3.3124 1.2656 2.2807 30 1 1.0243 2.7842 3.7277 31 1 2.7998 2.8172 4.1091 32 1 1.0311 0.7835 5.1436 33 1 3.5480 0.9912 5.7237 34 1 3.8908 0.2414 4.1461 35 1 3.0126 -0.6741 5.3945 36 1 1.9194 -0.6824 2.8200 37 1 0.4035 0.3191 2.8203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929775294.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:25 Heat of formation + Delta-G solvation = -4.879857 kcal Electronic energy + Delta-G solvation = -14638.662337 eV Core-core repulsion = 12415.563716 eV Total energy + Delta-G solvation = -2223.098621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64304 -38.19166 -34.69275 -31.57525 -31.23712 -29.05753 -26.59152 -26.33022 -24.75481 -22.90350 -20.69108 -19.39404 -18.87447 -17.07843 -16.71932 -16.12624 -15.88828 -15.48132 -14.76060 -14.46772 -14.26116 -13.88207 -13.51811 -13.30435 -13.17005 -12.92282 -12.74676 -12.71809 -12.42506 -12.19937 -11.96660 -11.71638 -11.58300 -11.42174 -11.22469 -10.90382 -10.77779 -10.61069 -8.86837 -8.27518 -6.29575 1.33100 1.34383 1.45014 2.34050 3.05820 3.29832 3.73989 3.81880 3.91542 3.97885 4.25670 4.42704 4.50977 4.56867 4.66608 4.70269 4.73640 4.81248 4.88779 4.93627 4.97054 5.01966 5.06228 5.10437 5.13429 5.24501 5.28489 5.39258 5.46166 5.55297 5.60008 5.73337 6.05136 6.48952 6.73402 6.77246 7.33762 8.89614 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051314 B = 0.007108 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.529378 B = 3938.447864 C = 4004.540044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.060 3.940 3 N -0.544 5.544 4 C 0.166 3.834 5 C -0.510 4.510 6 H 0.033 0.967 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.252 1.252 13 C 0.059 3.941 14 C -0.103 4.103 15 C -0.127 4.127 16 C -0.108 4.108 17 C -0.134 4.134 18 C -0.132 4.132 19 H 0.067 0.933 20 H 0.035 0.965 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.087 0.913 24 H -0.002 1.002 25 H 0.019 0.981 26 H 0.266 0.734 27 H 0.037 0.963 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 -0.263 18.575 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.068 4.068 3 N -0.267 5.267 4 C 0.039 3.961 5 C -0.549 4.549 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.176 1.176 13 C -0.069 4.069 14 C -0.122 4.122 15 C -0.165 4.165 16 C -0.126 4.126 17 C -0.191 4.191 18 C -0.169 4.169 19 H 0.085 0.915 20 H 0.054 0.946 21 H 0.090 0.910 22 H 0.060 0.940 23 H 0.105 0.895 24 H 0.016 0.984 25 H 0.037 0.963 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.896 -0.257 18.393 19.035 hybrid contribution -0.995 0.477 -1.016 1.500 sum -5.891 0.220 17.377 18.349 Atomic orbital electron populations 1.22320 0.97967 1.02499 1.01114 1.22024 0.93266 0.90242 1.01306 1.62073 1.60040 1.02737 1.01823 1.19993 0.93754 0.93745 0.88607 1.21275 1.20555 1.21563 0.91477 0.94822 1.25840 0.98529 0.99229 0.95450 1.70056 1.43921 1.45346 0.99831 0.85734 0.79839 0.79545 0.77938 1.19062 1.20672 1.17570 1.22214 0.97286 0.97488 0.89899 1.22532 0.99631 0.97492 0.92545 1.22995 1.02092 0.96506 0.94881 1.22261 0.98666 0.95782 0.95885 1.21596 0.95601 1.01220 1.00717 1.23192 1.00036 0.97531 0.96167 0.91462 0.94620 0.90960 0.93950 0.89476 0.98395 0.96267 0.92513 0.94451 0.92270 0.90195 0.89769 0.91160 0.89764 0.91639 0.93427 0.91794 0.91774 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.97 9.22 71.98 0.66 -5.31 16 2 C 0.06 2.27 5.42 86.30 0.47 2.74 16 3 N -0.54 -22.91 4.66 -900.77 -4.20 -27.11 16 4 C 0.17 8.18 3.66 85.56 0.31 8.50 16 5 C -0.51 -30.40 9.08 25.60 0.23 -30.17 16 6 H 0.03 2.25 7.77 -2.91 -0.02 2.22 16 7 C 0.01 0.37 5.47 84.65 0.46 0.84 16 8 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 9 Si 0.95 45.02 27.50 68.60 1.89 46.90 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.25 -11.22 6.50 99.48 0.65 -10.57 16 13 C 0.06 1.95 4.66 86.30 0.40 2.35 16 14 C -0.10 -2.76 3.10 -10.18 -0.03 -2.79 16 15 C -0.13 -2.64 7.23 31.12 0.23 -2.42 16 16 C -0.11 -2.01 4.54 -10.27 -0.05 -2.06 16 17 C -0.13 -2.32 9.58 71.98 0.69 -1.63 16 18 C -0.13 -2.98 5.47 31.21 0.17 -2.81 16 19 H 0.07 1.95 5.09 -2.39 -0.01 1.94 16 20 H 0.03 1.36 6.37 -2.39 -0.02 1.34 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.04 1.91 7.22 -2.39 -0.02 1.90 16 23 H 0.09 2.86 5.25 -2.38 -0.01 2.84 16 24 H 0.00 -0.07 4.87 -2.38 -0.01 -0.08 16 25 H 0.02 0.94 7.33 -2.39 -0.02 0.92 16 26 H 0.27 15.81 8.31 -92.71 -0.77 15.03 16 27 H 0.04 1.17 5.71 -2.38 -0.01 1.15 16 28 H 0.06 2.00 7.87 -2.39 -0.02 1.98 16 29 H 0.08 2.41 7.64 -2.39 -0.02 2.39 16 30 H 0.08 1.64 8.10 -2.38 -0.02 1.63 16 31 H 0.07 1.39 8.10 -2.39 -0.02 1.38 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.94 7.33 -2.39 -0.02 0.92 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 1.48 7.22 -2.39 -0.02 1.46 16 37 H 0.08 1.78 6.84 -2.39 -0.02 1.76 16 Total: -1.00 -66.11 277.85 2.50 -63.62 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.96 Total: 9.75 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 3.55 Total: -32.76 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -3.90 Total: -87.51 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.89 Total: 46.90 kcal Total: -66.11 2.50 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929775294.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.735 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds