Wall clock time and date at job start Sun Mar 29 2020 21:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00112 * 2 1 4 4 H 1.48502 * 109.46967 * 90.00540 * 3 2 1 5 5 H 1.48505 * 109.47170 * 210.00012 * 3 2 1 6 6 H 1.48498 * 109.47513 * 330.00626 * 3 2 1 7 7 C 1.38954 * 119.99693 * 179.73210 * 2 1 3 8 8 H 1.07998 * 120.00475 * 359.97438 * 7 2 1 9 9 N 1.37105 * 119.99814 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99872 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00458 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99701 * 179.97438 * 10 9 7 13 13 H 1.09005 * 109.40111 * 59.83102 * 12 10 9 14 14 C 1.53074 * 109.39697 * 179.56785 * 12 10 9 15 15 C 1.53358 * 108.42113 * 169.02714 * 14 12 10 16 16 C 1.52923 * 108.66097 * 292.45855 * 15 14 12 17 17 N 1.45748 * 110.49056 * 50.76807 * 16 15 14 18 18 C 1.33360 * 124.10576 * 340.92236 * 17 16 15 19 19 O 1.21273 * 118.24597 * 182.22201 * 18 17 16 20 20 H 0.96999 * 119.99859 * 359.97438 * 1 2 3 21 21 H 0.97004 * 120.00110 * 359.97438 * 9 7 2 22 22 H 1.08995 * 109.67703 * 288.76019 * 14 12 10 23 23 H 1.09001 * 109.67238 * 49.29966 * 14 12 10 24 24 H 1.09003 * 109.59681 * 172.71453 * 15 14 12 25 25 H 1.09000 * 109.61856 * 52.21426 * 15 14 12 26 26 H 1.09000 * 109.29865 * 290.45322 * 16 15 14 27 27 H 1.09005 * 109.29868 * 171.08287 * 16 15 14 28 28 H 0.96994 * 117.95129 * 160.90368 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4958 2.0463 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.6999 7 6 2.0088 -1.2034 0.0056 8 1 1.4689 -2.1387 0.0104 9 7 3.3799 -1.2034 0.0062 10 6 4.0537 -2.3706 0.0121 11 8 3.4473 -3.4210 0.0175 12 6 5.5608 -2.3706 0.0121 13 1 5.9229 -1.8493 0.8984 14 6 6.0692 -3.8143 0.0304 15 6 7.5774 -3.8005 -0.2467 16 6 7.8058 -3.3456 -1.6887 17 7 7.0798 -2.1102 -1.9550 18 6 6.0596 -1.6687 -1.2182 19 8 5.5049 -0.6460 -1.5602 20 1 -0.4850 0.8400 0.0004 21 1 3.8649 -0.3634 0.0022 22 1 5.8797 -4.2578 1.0079 23 1 5.5597 -4.3925 -0.7404 24 1 7.9833 -4.8030 -0.1109 25 1 8.0689 -3.1086 0.4372 26 1 7.4585 -4.1217 -2.3707 27 1 8.8710 -3.1793 -1.8496 28 1 7.3560 -1.5754 -2.7156 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118921807.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:31 Heat of formation + Delta-G solvation = -107.330262 kcal Electronic energy + Delta-G solvation = -14367.573274 eV Core-core repulsion = 11802.939970 eV Total energy + Delta-G solvation = -2564.633304 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79229 -39.69762 -37.55520 -36.03834 -34.06615 -33.64919 -30.89909 -27.41510 -25.27530 -23.71380 -21.64565 -20.73438 -19.73181 -18.36340 -17.97728 -17.31533 -16.90221 -16.02597 -15.55625 -15.33770 -15.15429 -14.69950 -14.49509 -14.26748 -14.17122 -13.07419 -12.89875 -12.48096 -12.31973 -12.22203 -12.01031 -11.87245 -11.56952 -10.87196 -10.54179 -10.28462 -10.04637 -8.49836 -6.08042 1.23503 1.27804 1.41189 1.43341 1.80051 2.17867 2.36537 2.86949 3.08675 3.61639 3.68871 3.89464 3.96402 4.29473 4.34047 4.58311 4.81677 4.90164 5.11472 5.12086 5.39600 5.48328 5.85523 5.87465 6.23196 6.50238 6.78347 7.14537 7.34224 7.84974 8.67013 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047277 B = 0.009937 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.113210 B = 2817.213408 C = 3224.692189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.003 4.003 3 Si 0.948 3.052 4 H -0.248 1.248 5 H -0.249 1.249 6 H -0.266 1.266 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.572 5.572 10 C 0.452 3.548 11 O -0.620 6.620 12 C -0.114 4.114 13 H 0.144 0.856 14 C -0.099 4.099 15 C -0.127 4.127 16 C 0.101 3.899 17 N -0.704 5.704 18 C 0.522 3.478 19 O -0.590 6.590 20 H 0.282 0.718 21 H 0.390 0.610 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.620 -3.130 -1.086 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.768 3.232 4 H -0.172 1.172 5 H -0.173 1.173 6 H -0.191 1.191 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.211 5.211 10 C 0.239 3.761 11 O -0.506 6.506 12 C -0.138 4.138 13 H 0.162 0.838 14 C -0.137 4.137 15 C -0.164 4.164 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.308 3.692 19 O -0.471 6.471 20 H 0.091 0.909 21 H 0.227 0.773 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.137 0.863 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 20.681 -3.332 -1.071 20.975 hybrid contribution -0.382 1.132 -0.370 1.250 sum 20.299 -2.200 -1.441 20.469 Atomic orbital electron populations 1.69770 1.07638 1.29346 1.49557 1.25952 0.96401 1.02185 0.95766 0.85584 0.79469 0.77750 0.80374 1.17186 1.17264 1.19071 1.19134 0.81380 0.95239 1.50398 0.91803 1.42211 1.06036 1.07973 1.64919 1.20234 0.89765 0.83479 0.82617 1.90519 1.70862 1.32364 1.56861 1.21401 0.91769 1.01725 0.98899 0.83816 1.21486 0.97075 0.91256 1.03918 1.21964 0.93373 1.05098 0.95997 1.21795 0.98011 0.84769 0.97618 1.45360 1.32712 1.26233 1.31208 1.19880 0.79932 0.84327 0.85069 1.90767 1.57347 1.27458 1.71569 0.90866 0.77284 0.89914 0.92473 0.86331 0.89359 0.90842 0.86406 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.04 13.96 21.66 0.30 -57.74 15 2 C 0.00 -0.17 5.50 84.93 0.47 0.29 15 3 Si 0.95 44.11 27.73 68.60 1.90 46.01 15 4 H -0.25 -10.59 7.11 99.48 0.71 -9.88 15 5 H -0.25 -11.38 6.52 99.48 0.65 -10.74 15 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 7 C -0.33 -21.10 10.16 84.04 0.85 -20.24 15 8 H 0.06 4.65 7.39 -2.91 -0.02 4.63 15 9 N -0.57 -31.15 4.58 -306.98 -1.40 -32.55 15 10 C 0.45 22.60 7.01 87.66 0.61 23.22 15 11 O -0.62 -35.77 15.37 -3.06 -0.05 -35.82 15 12 C -0.11 -3.88 2.78 -12.42 -0.03 -3.91 15 13 H 0.14 4.03 8.14 -2.38 -0.02 4.01 15 14 C -0.10 -2.59 4.78 30.74 0.15 -2.44 15 15 C -0.13 -1.75 6.02 30.69 0.18 -1.57 15 16 C 0.10 1.31 7.17 86.50 0.62 1.93 15 17 N -0.70 -15.60 5.45 -467.32 -2.55 -18.15 15 18 C 0.52 17.50 7.28 87.71 0.64 18.13 15 19 O -0.59 -25.39 15.56 -3.01 -0.05 -25.43 15 20 H 0.28 16.12 8.31 -92.71 -0.77 15.35 15 21 H 0.39 19.58 4.43 -92.71 -0.41 19.17 15 22 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.06 1.77 7.72 -2.39 -0.02 1.76 15 24 H 0.12 0.97 8.14 -2.39 -0.02 0.95 15 25 H 0.09 1.01 8.12 -2.39 -0.02 0.99 15 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 15 27 H 0.12 0.67 8.14 -2.38 -0.02 0.65 15 28 H 0.41 7.85 8.80 -92.71 -0.82 7.04 15 Total: -1.00 -84.07 239.56 1.56 -82.51 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -0.09 Total: 25.75 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 3.49 Total: 15.42 kcal Atomic # 7 Polarization: -104.79 SS G_CDS: -3.65 Total: -108.43 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -0.09 Total: -61.25 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.90 Total: 46.01 kcal Total: -84.07 1.56 -82.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118921807.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.822 kcal (2) G-P(sol) polarization free energy of solvation -84.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds