Wall clock time and date at job start Sun Mar 29 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.09006 * 109.40298 * 299.82104 * 12 10 9 14 14 C 1.53075 * 109.40100 * 179.97438 * 12 10 9 15 15 C 1.53339 * 108.42582 * 190.96963 * 14 12 10 16 16 C 1.52914 * 108.67816 * 67.53163 * 15 14 12 17 17 N 1.45752 * 110.48579 * 309.24770 * 16 15 14 18 18 C 1.33359 * 124.10897 * 19.07427 * 17 16 15 19 19 O 1.21277 * 118.24864 * 177.78483 * 18 17 16 20 20 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.67355 * 310.70529 * 14 12 10 23 23 H 1.09011 * 109.67211 * 71.23201 * 14 12 10 24 24 H 1.09008 * 109.60233 * 187.28929 * 15 14 12 25 25 H 1.09008 * 109.60534 * 307.60495 * 15 14 12 26 26 H 1.08997 * 109.29959 * 69.55421 * 16 15 14 27 27 H 1.08994 * 109.30612 * 188.93651 * 16 15 14 28 28 H 0.97004 * 117.94883 * 199.07529 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 1 5.9188 -1.8569 -0.9063 14 6 6.0692 -3.8143 -0.0196 15 6 7.5785 -3.7976 0.2505 16 6 7.8140 -3.3274 1.6863 17 7 7.0889 -2.0894 1.9430 18 6 6.0651 -1.6559 1.2066 19 8 5.5119 -0.6296 1.5404 20 1 -0.4850 0.8400 0.0004 21 1 3.8649 -0.3633 -0.0014 22 1 5.5633 -4.3846 0.7595 23 1 5.8752 -4.2680 -0.9916 24 1 7.9840 -4.8015 0.1232 25 1 8.0670 -3.1152 -0.4452 26 1 7.4701 -4.0963 2.3781 27 1 8.8798 -3.1592 1.8403 28 1 7.3686 -1.5466 2.6968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118921808.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:33 Heat of formation + Delta-G solvation = -77.316522 kcal Electronic energy + Delta-G solvation = -14367.350809 eV Core-core repulsion = 11804.018998 eV Total energy + Delta-G solvation = -2563.331811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.38720 -37.82047 -36.35662 -33.92466 -32.70105 -31.53863 -29.71313 -25.67618 -23.74962 -22.56354 -19.92479 -18.92579 -18.10882 -17.12063 -16.30019 -15.88840 -15.00476 -14.64703 -14.14128 -13.97117 -13.55323 -13.28073 -12.77708 -12.58181 -12.20520 -11.74643 -11.25881 -11.14132 -11.07445 -10.83168 -10.39509 -9.89604 -9.55586 -9.41513 -9.01001 -8.52098 -8.07444 -6.25549 -3.74639 2.80115 3.15535 3.26590 3.29501 3.35000 3.83979 4.23395 4.49437 4.71973 4.78716 4.94005 4.99384 5.33344 5.35298 5.54340 5.56447 5.72739 5.77410 6.11449 6.18378 6.44131 6.87622 7.37522 7.66168 8.21059 8.38574 8.66624 9.00251 9.52796 9.90526 10.86603 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047256 B = 0.009948 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.380562 B = 2813.830612 C = 3224.637454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.046 3.954 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.252 1.252 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.564 5.564 10 C 0.454 3.546 11 O -0.580 6.580 12 C -0.119 4.119 13 H 0.115 0.885 14 C -0.100 4.100 15 C -0.138 4.138 16 C 0.111 3.889 17 N -0.723 5.723 18 C 0.526 3.474 19 O -0.539 6.539 20 H 0.274 0.726 21 H 0.381 0.619 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.876 -3.737 1.104 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.157 4.157 3 Si 0.693 3.307 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.434 4.434 8 H 0.137 0.863 9 N -0.201 5.201 10 C 0.238 3.762 11 O -0.465 6.465 12 C -0.144 4.144 13 H 0.132 0.868 14 C -0.138 4.138 15 C -0.176 4.176 16 C -0.013 4.013 17 N -0.376 5.376 18 C 0.312 3.688 19 O -0.415 6.415 20 H 0.084 0.916 21 H 0.216 0.784 22 H 0.100 0.900 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 16.882 -3.892 1.083 17.358 hybrid contribution 0.763 1.534 0.329 1.745 sum 17.645 -2.358 1.412 17.858 Atomic orbital electron populations 1.69635 1.05732 1.27646 1.48766 1.25033 0.95468 0.98177 0.97057 0.86786 0.81193 0.83644 0.79121 1.19651 1.20156 1.17611 1.19484 0.79405 0.96620 1.47894 0.86291 1.42263 1.07432 1.06770 1.63648 1.18940 0.86625 0.84810 0.85810 1.90548 1.68734 1.31022 1.56195 1.21388 0.97385 0.98409 0.97176 0.86769 1.21427 0.93473 0.94367 1.04508 1.21935 0.97578 1.02464 0.95619 1.21369 0.96048 0.86329 0.97598 1.45404 1.34197 1.25026 1.32958 1.19992 0.79056 0.85032 0.84729 1.90791 1.55471 1.25142 1.70142 0.91607 0.78355 0.89994 0.90070 0.89663 0.91074 0.91692 0.90842 0.76750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.73 13.96 55.50 0.77 -25.95 15 2 C 0.05 1.35 5.50 -17.47 -0.10 1.26 15 3 Si 0.87 21.17 27.74 -169.99 -4.71 16.46 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.25 -6.10 6.52 56.52 0.37 -5.73 15 7 C -0.31 -9.22 10.16 -14.93 -0.15 -9.37 15 8 H 0.12 4.00 7.39 -52.49 -0.39 3.61 15 9 N -0.56 -14.98 4.58 -10.96 -0.05 -15.03 15 10 C 0.45 11.09 7.02 -10.99 -0.08 11.01 15 11 O -0.58 -16.04 15.37 5.55 0.09 -15.96 15 12 C -0.12 -2.11 2.78 -93.14 -0.26 -2.37 15 13 H 0.11 1.75 8.14 -51.93 -0.42 1.33 15 14 C -0.10 -1.41 4.78 -26.52 -0.13 -1.54 15 15 C -0.14 -1.29 6.02 -26.60 -0.16 -1.45 15 16 C 0.11 1.00 7.17 -4.49 -0.03 0.97 15 17 N -0.72 -9.22 5.45 -61.40 -0.33 -9.55 15 18 C 0.53 9.29 7.28 -11.87 -0.09 9.20 15 19 O -0.54 -11.81 15.53 5.56 0.09 -11.73 15 20 H 0.27 7.68 8.31 -40.82 -0.34 7.34 15 21 H 0.38 9.57 4.39 -40.82 -0.18 9.39 15 22 H 0.08 1.31 7.73 -51.93 -0.40 0.91 15 23 H 0.08 1.11 8.14 -51.92 -0.42 0.69 15 24 H 0.08 0.60 8.14 -51.92 -0.42 0.18 15 25 H 0.07 0.61 8.13 -51.92 -0.42 0.19 15 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 15 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 15 28 H 0.40 4.48 8.80 -40.82 -0.36 4.12 15 LS Contribution 239.51 15.07 3.61 3.61 Total: -1.00 -35.88 239.51 -4.56 -40.44 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -3.03 Total: 10.00 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -0.99 Total: 7.72 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: 0.39 Total: -50.54 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: 0.17 Total: -27.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.71 Total: 16.46 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -35.88 -4.56 -40.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118921808.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.876 kcal (2) G-P(sol) polarization free energy of solvation -35.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds