Wall clock time and date at job start Sun Mar 29 2020 21:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00058 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00326 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00300 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00299 * 359.97438 * 7 2 1 9 9 N 1.37104 * 120.00030 * 179.97438 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 H 1.09006 * 109.40298 * 299.82104 * 12 10 9 14 14 C 1.53075 * 109.40100 * 179.97438 * 12 10 9 15 15 C 1.53339 * 108.42582 * 190.96963 * 14 12 10 16 16 C 1.52914 * 108.67816 * 67.53163 * 15 14 12 17 17 N 1.45752 * 110.48579 * 309.24770 * 16 15 14 18 18 C 1.33359 * 124.10897 * 19.07427 * 17 16 15 19 19 O 1.21277 * 118.24864 * 177.78483 * 18 17 16 20 20 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 21 21 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.67355 * 310.70529 * 14 12 10 23 23 H 1.09011 * 109.67211 * 71.23201 * 14 12 10 24 24 H 1.09008 * 109.60233 * 187.28929 * 15 14 12 25 25 H 1.09008 * 109.60534 * 307.60495 * 15 14 12 26 26 H 1.08997 * 109.29959 * 69.55421 * 16 15 14 27 27 H 1.08994 * 109.30612 * 188.93651 * 16 15 14 28 28 H 0.97004 * 117.94883 * 199.07529 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0089 -1.2034 -0.0005 8 1 1.4689 -2.1387 -0.0005 9 7 3.3799 -1.2034 -0.0011 10 6 4.0537 -2.3706 -0.0072 11 8 3.4473 -3.4211 -0.0072 12 6 5.5607 -2.3705 -0.0141 13 1 5.9188 -1.8569 -0.9063 14 6 6.0692 -3.8143 -0.0196 15 6 7.5785 -3.7976 0.2505 16 6 7.8140 -3.3274 1.6863 17 7 7.0889 -2.0894 1.9430 18 6 6.0651 -1.6559 1.2066 19 8 5.5119 -0.6296 1.5404 20 1 -0.4850 0.8400 0.0004 21 1 3.8649 -0.3633 -0.0014 22 1 5.5633 -4.3846 0.7595 23 1 5.8752 -4.2680 -0.9916 24 1 7.9840 -4.8015 0.1232 25 1 8.0670 -3.1152 -0.4452 26 1 7.4701 -4.0963 2.3781 27 1 8.8798 -3.1592 1.8403 28 1 7.3686 -1.5466 2.6968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118921808.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:33 Heat of formation + Delta-G solvation = -107.312562 kcal Electronic energy + Delta-G solvation = -14368.651535 eV Core-core repulsion = 11804.018998 eV Total energy + Delta-G solvation = -2564.632537 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.79273 -39.69564 -37.55601 -36.03696 -34.06609 -33.64837 -30.90020 -27.41539 -25.27587 -23.71297 -21.64624 -20.73345 -19.73313 -18.36235 -17.97808 -17.31222 -16.90064 -16.02519 -15.55870 -15.33824 -15.15501 -14.69898 -14.49250 -14.26736 -14.17171 -13.07564 -12.89968 -12.48007 -12.32003 -12.22201 -12.01012 -11.87154 -11.56977 -10.87046 -10.54175 -10.28431 -10.04654 -8.49848 -6.08043 1.23469 1.27821 1.41236 1.43485 1.80019 2.17859 2.36414 2.87057 3.08633 3.61468 3.68988 3.89558 3.96449 4.29504 4.34049 4.58156 4.81720 4.90171 5.11466 5.12134 5.39627 5.48355 5.85502 5.87450 6.23175 6.50294 6.78364 7.14482 7.34326 7.85055 8.66987 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.047256 B = 0.009948 C = 0.008681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.380562 B = 2813.830612 C = 3224.637454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.003 4.003 3 Si 0.948 3.052 4 H -0.248 1.248 5 H -0.266 1.266 6 H -0.248 1.248 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.572 5.572 10 C 0.452 3.548 11 O -0.620 6.620 12 C -0.114 4.114 13 H 0.144 0.856 14 C -0.099 4.099 15 C -0.127 4.127 16 C 0.101 3.899 17 N -0.704 5.704 18 C 0.522 3.478 19 O -0.590 6.590 20 H 0.282 0.718 21 H 0.391 0.609 22 H 0.056 0.944 23 H 0.082 0.918 24 H 0.118 0.882 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.627 -3.119 1.081 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.768 3.232 4 H -0.172 1.172 5 H -0.191 1.191 6 H -0.173 1.173 7 C -0.462 4.462 8 H 0.082 0.918 9 N -0.212 5.212 10 C 0.239 3.761 11 O -0.506 6.506 12 C -0.138 4.138 13 H 0.162 0.838 14 C -0.137 4.137 15 C -0.164 4.164 16 C -0.022 4.022 17 N -0.355 5.355 18 C 0.308 3.692 19 O -0.471 6.471 20 H 0.091 0.909 21 H 0.227 0.773 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.136 0.864 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 20.688 -3.321 1.069 20.980 hybrid contribution -0.380 1.136 0.363 1.251 sum 20.309 -2.185 1.432 20.476 Atomic orbital electron populations 1.69769 1.07633 1.29346 1.49559 1.25948 0.96397 1.02175 0.95769 0.85587 0.79479 0.77763 0.80374 1.17195 1.19070 1.17256 1.19135 0.81385 0.95239 1.50394 0.91798 1.42218 1.06036 1.07986 1.64916 1.20235 0.89764 0.83480 0.82629 1.90520 1.70860 1.32362 1.56868 1.21402 0.91734 1.01608 0.99036 0.83823 1.21482 0.97068 0.91251 1.03918 1.21956 0.93344 1.05061 0.96088 1.21790 0.98023 0.84672 0.97684 1.45363 1.32449 1.25901 1.31797 1.19886 0.79965 0.84451 0.84916 1.90766 1.57560 1.27335 1.71485 0.90865 0.77259 0.92473 0.89919 0.86350 0.89357 0.90829 0.86406 0.75583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.04 13.96 21.66 0.30 -57.73 15 2 C 0.00 -0.17 5.50 84.93 0.47 0.30 15 3 Si 0.95 44.13 27.74 68.60 1.90 46.03 15 4 H -0.25 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.25 -11.40 6.52 99.48 0.65 -10.75 15 7 C -0.33 -21.10 10.16 84.04 0.85 -20.25 15 8 H 0.06 4.65 7.39 -2.91 -0.02 4.63 15 9 N -0.57 -31.17 4.58 -306.98 -1.40 -32.57 15 10 C 0.45 22.60 7.02 87.66 0.62 23.22 15 11 O -0.62 -35.77 15.37 -3.07 -0.05 -35.82 15 12 C -0.11 -3.87 2.78 -12.43 -0.03 -3.91 15 13 H 0.14 4.03 8.14 -2.38 -0.02 4.01 15 14 C -0.10 -2.59 4.78 30.73 0.15 -2.44 15 15 C -0.13 -1.75 6.02 30.68 0.18 -1.57 15 16 C 0.10 1.32 7.17 86.49 0.62 1.94 15 17 N -0.70 -15.58 5.45 -467.34 -2.55 -18.13 15 18 C 0.52 17.48 7.28 87.71 0.64 18.12 15 19 O -0.59 -25.36 15.53 -3.02 -0.05 -25.41 15 20 H 0.28 16.12 8.31 -92.71 -0.77 15.35 15 21 H 0.39 19.61 4.39 -92.71 -0.41 19.20 15 22 H 0.06 1.77 7.73 -2.39 -0.02 1.75 15 23 H 0.08 2.12 8.14 -2.38 -0.02 2.10 15 24 H 0.12 0.97 8.14 -2.38 -0.02 0.95 15 25 H 0.09 1.01 8.13 -2.38 -0.02 0.99 15 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 15 27 H 0.12 0.67 8.14 -2.39 -0.02 0.65 15 28 H 0.41 7.84 8.80 -92.71 -0.82 7.02 15 Total: -1.00 -84.05 239.51 1.56 -82.48 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.09 Total: 25.74 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 3.49 Total: 15.41 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -3.65 Total: -108.43 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -0.09 Total: -61.23 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -84.05 1.56 -82.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118921808.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.830 kcal (2) G-P(sol) polarization free energy of solvation -84.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds