Wall clock time and date at job start Sun Mar 29 2020 21:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38162 * 119.55350 * 2 1 4 4 C 1.38832 * 119.35168 * 180.02562 * 3 2 1 5 5 C 1.38456 * 118.49421 * 0.02562 * 4 3 2 6 6 Cl 1.73599 * 120.46498 * 179.97438 * 5 4 3 7 7 C 1.39298 * 119.06602 * 0.27900 * 5 4 3 8 8 N 1.38858 * 119.71846 * 179.70087 * 7 5 4 9 9 C 1.36903 * 119.99925 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00295 * 359.97438 * 9 8 7 11 11 C 1.38814 * 119.99795 * 180.02562 * 9 8 7 12 12 N 1.31569 * 120.00103 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00103 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47131 * 59.99329 * 13 11 9 15 15 H 1.48500 * 109.47477 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47234 * 299.99937 * 13 11 9 17 17 N 1.31871 * 119.55938 * 180.02562 * 2 1 3 18 18 H 1.09000 * 109.46751 * 89.99794 * 1 2 3 19 19 H 1.08999 * 109.46799 * 209.99529 * 1 2 3 20 20 H 1.08995 * 109.47177 * 329.99734 * 1 2 3 21 21 H 1.08002 * 120.32610 * 0.02562 * 3 2 1 22 22 H 1.08003 * 120.75670 * 179.97438 * 4 3 2 23 23 H 0.96997 * 120.00128 * 359.97438 * 8 7 5 24 24 H 0.97003 * 120.00081 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5768 1.1970 -0.0005 5 6 4.2330 -0.0222 -0.0016 6 17 5.9678 -0.0880 -0.0030 7 6 3.4817 -1.1952 -0.0080 8 7 4.1259 -2.4252 -0.0155 9 6 3.3931 -3.5816 -0.0223 10 1 2.3141 -3.5372 -0.0215 11 6 4.0372 -4.8113 -0.0292 12 7 5.3517 -4.8655 -0.0297 13 14 3.0374 -6.3892 -0.0379 14 1 2.1809 -6.4259 -1.2504 15 1 3.9551 -7.5567 -0.0451 16 1 2.1813 -6.4395 1.1745 17 7 2.1576 -1.1471 -0.0005 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5138 21 1 1.6465 2.1361 0.0004 22 1 4.1324 2.1231 -0.0010 23 1 5.0950 -2.4652 -0.0166 24 1 5.8018 -5.7248 -0.0349 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530649.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:14 Heat of formation + Delta-G solvation = 3.787234 kcal Electronic energy + Delta-G solvation = -11592.514732 eV Core-core repulsion = 9337.575914 eV Total energy + Delta-G solvation = -2254.938818 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87691 -37.40809 -37.10516 -34.08025 -33.17100 -31.39516 -28.22543 -26.40097 -23.32185 -22.91840 -19.74860 -18.31803 -17.16171 -16.95540 -16.23863 -15.55370 -15.38381 -14.73962 -13.90320 -13.83100 -13.45544 -13.12902 -13.02742 -12.89984 -12.59165 -12.50086 -12.13631 -11.85127 -11.78042 -10.71184 -10.17757 -10.04274 -8.74447 -8.51665 -5.79441 0.44676 0.72869 1.40151 1.45386 1.49292 1.52492 2.25835 2.83851 3.02220 3.33496 3.95818 4.05216 4.41554 4.62741 4.79607 4.92196 4.94870 5.27872 5.33036 5.39460 5.42307 5.73803 6.10241 6.72641 7.12514 7.35183 7.82633 8.65649 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.011529 C = 0.008282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.981191 B = 2428.068764 C = 3379.901202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.171 3.829 3 C -0.277 4.277 4 C -0.009 4.009 5 C -0.222 4.222 6 Cl -0.088 7.088 7 C 0.356 3.644 8 N -0.551 5.551 9 C -0.309 4.309 10 H 0.104 0.896 11 C -0.029 4.029 12 N -0.927 5.927 13 Si 1.004 2.996 14 H -0.267 1.267 15 H -0.277 1.277 16 H -0.267 1.267 17 N -0.572 5.572 18 H 0.087 0.913 19 H 0.062 0.938 20 H 0.104 0.896 21 H 0.163 0.837 22 H 0.157 0.843 23 H 0.404 0.596 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 9.155 0.005 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.027 3.973 3 C -0.303 4.303 4 C -0.035 4.035 5 C -0.259 4.259 6 Cl -0.060 7.060 7 C 0.113 3.887 8 N -0.160 5.160 9 C -0.439 4.439 10 H 0.122 0.878 11 C -0.228 4.228 12 N -0.566 5.566 13 Si 0.827 3.173 14 H -0.192 1.192 15 H -0.201 1.201 16 H -0.192 1.192 17 N -0.294 5.294 18 H 0.105 0.895 19 H 0.081 0.919 20 H 0.122 0.878 21 H 0.180 0.820 22 H 0.175 0.825 23 H 0.241 0.759 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.746 7.873 0.008 9.747 hybrid contribution 1.202 -0.230 -0.016 1.224 sum -4.545 7.643 -0.009 8.892 Atomic orbital electron populations 1.20756 0.86801 1.03922 1.03699 1.21723 0.98111 0.87728 0.89769 1.21574 0.93182 0.99322 1.16200 1.21340 0.94924 0.95371 0.91824 1.21066 0.83783 0.95164 1.25852 1.98265 1.11281 1.98587 1.97880 1.18305 0.88905 0.85569 0.95922 1.41093 1.08399 1.02076 1.64437 1.20025 0.93200 0.83435 1.47242 0.87815 1.26288 0.97001 1.02697 0.96835 1.69786 1.08794 1.28098 1.49923 0.84810 0.77455 0.75754 0.79293 1.19151 1.20143 1.19153 1.67180 1.06500 1.30876 1.24865 0.89473 0.91878 0.87773 0.81952 0.82535 0.75933 0.91307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.44 10.17 71.24 0.72 -1.71 14 2 C 0.17 6.16 6.78 42.54 0.29 6.45 14 3 C -0.28 -8.60 9.73 22.39 0.22 -8.38 14 4 C -0.01 -0.31 9.97 22.46 0.22 -0.08 14 5 C -0.22 -9.35 6.37 22.58 0.14 -9.21 14 6 Cl -0.09 -3.47 27.62 -2.72 -0.08 -3.55 14 7 C 0.36 17.49 7.43 133.12 0.99 18.48 14 8 N -0.55 -30.04 5.38 -189.13 -1.02 -31.06 14 9 C -0.31 -17.37 9.70 84.04 0.82 -16.55 14 10 H 0.10 5.84 7.08 -2.91 -0.02 5.82 14 11 C -0.03 -1.57 5.50 84.87 0.47 -1.10 14 12 N -0.93 -52.37 13.05 21.65 0.28 -52.09 14 13 Si 1.00 42.83 29.55 68.60 2.03 44.86 14 14 H -0.27 -11.03 7.11 99.48 0.71 -10.32 14 15 H -0.28 -11.36 7.11 99.48 0.71 -10.66 14 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 14 17 N -0.57 -26.59 9.00 -181.21 -1.63 -28.22 14 18 H 0.09 2.00 8.14 -2.39 -0.02 1.98 14 19 H 0.06 1.75 8.14 -2.39 -0.02 1.73 14 20 H 0.10 1.92 8.08 -2.39 -0.02 1.90 14 21 H 0.16 3.58 8.06 -2.91 -0.02 3.56 14 22 H 0.16 4.13 8.06 -2.91 -0.02 4.11 14 23 H 0.40 22.34 6.55 -92.71 -0.61 21.73 14 24 H 0.28 14.69 8.31 -92.71 -0.77 13.92 14 Total: -1.00 -62.78 233.99 4.07 -58.71 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.62 Total: 23.46 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 3.87 Total: -12.12 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -2.37 Total: -111.36 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.08 Total: -3.55 kcal Total: -62.78 4.07 -58.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530649.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.497 kcal (2) G-P(sol) polarization free energy of solvation -62.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds