Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38119 * 119.56144 * 2 1 4 4 C 1.38979 * 119.31714 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 120.75732 * 180.02562 * 4 3 2 6 6 C 1.38503 * 118.48635 * 0.02562 * 4 3 2 7 7 C 1.39129 * 119.06786 * 359.97438 * 6 4 3 8 8 N 1.38855 * 119.69868 * 179.97438 * 7 6 4 9 9 C 1.36907 * 120.00126 * 0.02562 * 8 7 6 10 10 H 1.08004 * 120.00272 * 0.27741 * 9 8 7 11 11 C 1.38815 * 120.00099 * 179.97438 * 9 8 7 12 12 N 1.31558 * 119.99839 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99958 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46986 * 90.00489 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00506 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00336 * 13 11 9 17 17 N 1.31888 * 119.56175 * 180.25706 * 2 1 3 18 18 H 1.09002 * 109.47437 * 89.99736 * 1 2 3 19 19 H 1.08994 * 109.47223 * 209.99678 * 1 2 3 20 20 H 1.09000 * 109.46928 * 329.99530 * 1 2 3 21 21 H 1.08000 * 120.33764 * 0.02577 * 3 2 1 22 22 H 1.07991 * 120.46370 * 179.97438 * 6 4 3 23 23 H 0.96999 * 119.99826 * 180.02562 * 8 7 6 24 24 H 0.97000 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2014 0.0000 4 6 3.5782 1.1955 -0.0005 5 17 4.4723 2.6835 0.0001 6 6 4.2335 -0.0247 -0.0016 7 6 3.4821 -1.1956 -0.0016 8 7 4.1257 -2.4260 -0.0032 9 6 5.4935 -2.4831 -0.0043 10 1 6.0721 -1.5711 0.0007 11 6 6.1369 -3.7132 -0.0053 12 7 5.4322 -4.8241 -0.0058 13 14 8.0033 -3.7910 -0.0061 14 1 8.4984 -3.8127 1.3938 15 1 8.4470 -5.0225 -0.7072 16 1 8.5482 -2.5997 -0.7055 17 7 2.1576 -1.1472 -0.0051 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.6467 2.1357 0.0004 22 1 5.3126 -0.0665 -0.0025 23 1 3.6061 -3.2451 -0.0035 24 1 5.8817 -5.6836 -0.0069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155530920.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = 20.604353 kcal Electronic energy + Delta-G solvation = -11442.905337 eV Core-core repulsion = 9188.695764 eV Total energy + Delta-G solvation = -2254.209573 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.24874 -36.13382 -35.50130 -32.40893 -31.40476 -29.90388 -26.49424 -25.05875 -21.82291 -21.08693 -17.91600 -16.78419 -15.72957 -14.88654 -14.55458 -13.94507 -13.74644 -13.32653 -12.57215 -12.44861 -11.94892 -11.83453 -11.79665 -11.38143 -11.23300 -10.55708 -10.44978 -10.30141 -10.16566 -8.88277 -8.54734 -8.52634 -7.10259 -6.73156 -3.94747 2.10241 2.22765 2.67600 3.08109 3.09677 3.13390 3.90113 4.51729 4.73875 5.09795 5.33984 5.75588 5.95373 6.02218 6.11117 6.26546 6.38878 6.56462 6.84100 6.95516 7.18971 7.37915 7.72427 8.48755 8.83260 9.17286 9.55279 10.42601 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.032214 B = 0.009419 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.968179 B = 2971.924549 C = 3825.748375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.197 3.803 3 C -0.304 4.304 4 C 0.065 3.935 5 Cl -0.094 7.094 6 C -0.257 4.257 7 C 0.372 3.628 8 N -0.522 5.522 9 C -0.305 4.305 10 H 0.106 0.894 11 C 0.027 3.973 12 N -0.879 5.879 13 Si 0.937 3.063 14 H -0.274 1.274 15 H -0.279 1.279 16 H -0.266 1.266 17 N -0.572 5.572 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.067 0.933 21 H 0.118 0.882 22 H 0.132 0.868 23 H 0.406 0.594 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 7.750 0.004 8.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 C -0.331 4.331 4 C 0.031 3.969 5 Cl -0.065 7.065 6 C -0.285 4.285 7 C 0.128 3.872 8 N -0.127 5.127 9 C -0.435 4.435 10 H 0.124 0.876 11 C -0.179 4.179 12 N -0.515 5.515 13 Si 0.762 3.238 14 H -0.199 1.199 15 H -0.204 1.204 16 H -0.190 1.190 17 N -0.295 5.295 18 H 0.089 0.911 19 H 0.089 0.911 20 H 0.086 0.914 21 H 0.136 0.864 22 H 0.150 0.850 23 H 0.242 0.758 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.930 6.664 -0.006 7.279 hybrid contribution 1.327 0.434 0.000 1.396 sum -1.603 7.098 -0.006 7.277 Atomic orbital electron populations 1.20606 0.89939 1.02504 1.02281 1.20498 0.95429 0.87236 0.91613 1.20833 0.91870 0.98688 1.21729 1.20751 0.91712 0.85662 0.98749 1.98306 1.76167 1.35127 1.96893 1.20933 1.00818 0.89885 1.16879 1.18019 0.87310 0.86433 0.95462 1.40833 1.06222 1.03659 1.61981 1.19798 0.80640 0.94629 1.48476 0.87604 1.25389 1.01429 0.94523 0.96564 1.69695 1.37034 0.98155 1.46583 0.85744 0.80845 0.78392 0.78778 1.19930 1.20443 1.19037 1.66881 1.07951 1.29410 1.25251 0.91085 0.91051 0.91376 0.86374 0.85020 0.75775 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.17 36.00 0.37 -1.01 14 2 C 0.20 3.82 6.78 -82.61 -0.56 3.26 14 3 C -0.30 -5.68 9.56 -39.35 -0.38 -6.05 14 4 C 0.06 1.29 6.37 -39.21 -0.25 1.04 14 5 Cl -0.09 -1.59 29.02 -51.86 -1.50 -3.09 14 6 C -0.26 -5.72 9.15 -39.15 -0.36 -6.08 14 7 C 0.37 8.91 7.62 -155.05 -1.18 7.73 14 8 N -0.52 -13.27 5.44 -11.16 -0.06 -13.33 14 9 C -0.31 -7.78 9.54 -15.07 -0.14 -7.92 14 10 H 0.11 2.58 5.65 -52.48 -0.30 2.28 14 11 C 0.03 0.66 5.50 -17.46 -0.10 0.57 14 12 N -0.88 -23.11 13.05 55.49 0.72 -22.39 14 13 Si 0.94 19.37 29.55 -169.99 -5.02 14.34 14 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 14 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 14 17 N -0.57 -12.94 10.30 -8.67 -0.09 -13.03 14 18 H 0.07 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.07 1.02 8.14 -51.93 -0.42 0.59 14 20 H 0.07 0.81 8.08 -51.93 -0.42 0.39 14 21 H 0.12 1.90 8.06 -52.49 -0.42 1.48 14 22 H 0.13 2.91 5.94 -52.49 -0.31 2.60 14 23 H 0.41 10.63 8.01 -40.82 -0.33 10.31 14 24 H 0.28 6.86 8.31 -40.82 -0.34 6.52 14 LS Contribution 233.70 15.07 3.52 3.52 Total: -1.00 -26.50 233.70 -6.79 -33.28 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -1.76 Total: 9.16 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -2.60 Total: -8.47 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.57 Total: -48.75 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -1.50 Total: -3.09 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -26.50 -6.79 -33.28 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530920.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.889 kcal (2) G-P(sol) polarization free energy of solvation -26.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds