Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38119 * 119.56144 * 2 1 4 4 C 1.38979 * 119.31714 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 120.75732 * 180.02562 * 4 3 2 6 6 C 1.38503 * 118.48635 * 0.02562 * 4 3 2 7 7 C 1.39129 * 119.06786 * 359.97438 * 6 4 3 8 8 N 1.38855 * 119.69868 * 179.97438 * 7 6 4 9 9 C 1.36907 * 120.00126 * 0.02562 * 8 7 6 10 10 H 1.08004 * 120.00272 * 0.27741 * 9 8 7 11 11 C 1.38815 * 120.00099 * 179.97438 * 9 8 7 12 12 N 1.31558 * 119.99839 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99958 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46986 * 90.00489 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00506 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00336 * 13 11 9 17 17 N 1.31888 * 119.56175 * 180.25706 * 2 1 3 18 18 H 1.09002 * 109.47437 * 89.99736 * 1 2 3 19 19 H 1.08994 * 109.47223 * 209.99678 * 1 2 3 20 20 H 1.09000 * 109.46928 * 329.99530 * 1 2 3 21 21 H 1.08000 * 120.33764 * 0.02577 * 3 2 1 22 22 H 1.07991 * 120.46370 * 179.97438 * 6 4 3 23 23 H 0.96999 * 119.99826 * 180.02562 * 8 7 6 24 24 H 0.97000 * 120.00207 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2014 0.0000 4 6 3.5782 1.1955 -0.0005 5 17 4.4723 2.6835 0.0001 6 6 4.2335 -0.0247 -0.0016 7 6 3.4821 -1.1956 -0.0016 8 7 4.1257 -2.4260 -0.0032 9 6 5.4935 -2.4831 -0.0043 10 1 6.0721 -1.5711 0.0007 11 6 6.1369 -3.7132 -0.0053 12 7 5.4322 -4.8241 -0.0058 13 14 8.0033 -3.7910 -0.0061 14 1 8.4984 -3.8127 1.3938 15 1 8.4470 -5.0225 -0.7072 16 1 8.5482 -2.5997 -0.7055 17 7 2.1576 -1.1472 -0.0051 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.6467 2.1357 0.0004 22 1 5.3126 -0.0665 -0.0025 23 1 3.6061 -3.2451 -0.0035 24 1 5.8817 -5.6836 -0.0069 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155530920.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = 5.250824 kcal Electronic energy + Delta-G solvation = -11443.571116 eV Core-core repulsion = 9188.695764 eV Total energy + Delta-G solvation = -2254.875352 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.93097 -37.68164 -37.19342 -34.14892 -33.02293 -31.53598 -27.97246 -26.90261 -23.47036 -22.73039 -19.72774 -18.48066 -17.41248 -16.59163 -16.18037 -15.52611 -15.44000 -15.01078 -14.04823 -13.77699 -13.64803 -13.42079 -13.03509 -12.92726 -12.82668 -12.25692 -12.11879 -11.82517 -11.78234 -10.62963 -10.22852 -10.16465 -8.84686 -8.56408 -5.87051 0.45435 0.58911 1.12067 1.41142 1.47000 1.54411 2.21020 2.78874 3.03201 3.30574 3.81578 4.36304 4.41279 4.55060 4.83236 4.85102 4.92835 5.15470 5.20866 5.31186 5.42486 5.66043 6.03439 6.65036 7.06980 7.34264 7.75553 8.61759 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.032214 B = 0.009419 C = 0.007317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.968179 B = 2971.924549 C = 3825.748375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.186 3.814 3 C -0.284 4.284 4 C 0.061 3.939 5 Cl -0.063 7.063 6 C -0.279 4.279 7 C 0.363 3.637 8 N -0.551 5.551 9 C -0.324 4.324 10 H 0.109 0.891 11 C -0.022 4.022 12 N -0.921 5.921 13 Si 1.003 2.997 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.258 1.258 17 N -0.594 5.594 18 H 0.089 0.911 19 H 0.069 0.931 20 H 0.101 0.899 21 H 0.156 0.844 22 H 0.125 0.875 23 H 0.395 0.605 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 10.084 -0.013 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 C -0.310 4.310 4 C 0.027 3.973 5 Cl -0.034 7.034 6 C -0.307 4.307 7 C 0.121 3.879 8 N -0.159 5.159 9 C -0.454 4.454 10 H 0.126 0.874 11 C -0.222 4.222 12 N -0.559 5.559 13 Si 0.826 3.174 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.182 1.182 17 N -0.318 5.318 18 H 0.108 0.892 19 H 0.088 0.912 20 H 0.120 0.880 21 H 0.173 0.827 22 H 0.143 0.857 23 H 0.229 0.771 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.645 9.076 -0.022 9.781 hybrid contribution 1.300 0.028 0.006 1.301 sum -2.345 9.104 -0.016 9.401 Atomic orbital electron populations 1.20755 0.86118 1.04157 1.03955 1.21447 0.97928 0.86547 0.89868 1.21357 0.91480 1.00054 1.18136 1.20949 0.92618 0.86222 0.97462 1.98317 1.75701 1.32720 1.96645 1.20964 1.00673 0.90544 1.18567 1.18396 0.88192 0.86581 0.94715 1.40830 1.06166 1.03639 1.65217 1.20051 0.81079 0.95073 1.49192 0.87357 1.26282 1.05735 0.93944 0.96259 1.69801 1.38625 0.98575 1.48920 0.84758 0.75439 0.78445 0.78796 1.19510 1.20227 1.18233 1.66984 1.07555 1.31426 1.25797 0.89212 0.91188 0.88003 0.82661 0.85670 0.77122 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.31 10.17 71.23 0.72 -1.58 14 2 C 0.19 6.69 6.78 42.52 0.29 6.98 14 3 C -0.28 -9.59 9.56 22.42 0.21 -9.38 14 4 C 0.06 2.30 6.37 22.51 0.14 2.45 14 5 Cl -0.06 -1.95 29.02 -2.72 -0.08 -2.03 14 6 C -0.28 -12.37 9.15 22.55 0.21 -12.17 14 7 C 0.36 17.64 7.62 133.07 1.01 18.65 14 8 N -0.55 -29.17 5.44 -189.23 -1.03 -30.20 14 9 C -0.32 -17.12 9.54 84.04 0.80 -16.32 14 10 H 0.11 5.45 5.65 -2.91 -0.02 5.43 14 11 C -0.02 -1.12 5.50 84.87 0.47 -0.65 14 12 N -0.92 -50.39 13.05 21.65 0.28 -50.11 14 13 Si 1.00 40.45 29.55 68.60 2.03 42.47 14 14 H -0.27 -10.58 7.11 99.48 0.71 -9.87 14 15 H -0.28 -10.94 7.11 99.48 0.71 -10.23 14 16 H -0.26 -9.94 7.11 99.48 0.71 -9.23 14 17 N -0.59 -26.64 10.30 -181.35 -1.87 -28.51 14 18 H 0.09 1.96 8.14 -2.39 -0.02 1.94 14 19 H 0.07 1.79 8.14 -2.39 -0.02 1.77 14 20 H 0.10 1.87 8.08 -2.39 -0.02 1.86 14 21 H 0.16 4.11 8.06 -2.91 -0.02 4.09 14 22 H 0.13 5.61 5.94 -2.92 -0.02 5.60 14 23 H 0.39 21.85 8.01 -92.71 -0.74 21.10 14 24 H 0.28 14.27 8.31 -92.71 -0.77 13.50 14 Total: -1.00 -58.12 233.70 3.68 -54.44 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.49 Total: 25.96 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 3.86 Total: -12.02 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -2.62 Total: -108.82 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.08 Total: -2.03 kcal Total: -58.12 3.68 -54.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155530920.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.686 kcal (2) G-P(sol) polarization free energy of solvation -58.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds