Wall clock time and date at job start Sun Mar 29 2020 21:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38163 * 120.32341 * 2 1 4 4 N 1.31874 * 120.88666 * 180.02562 * 3 2 1 5 5 C 1.32500 * 121.63901 * 359.97438 * 4 3 2 6 6 N 1.38864 * 119.71972 * 179.97438 * 5 4 3 7 7 C 1.36896 * 120.00276 * 0.02562 * 6 5 4 8 8 H 1.07999 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31577 * 119.99511 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00351 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47473 * 89.99677 * 11 9 7 13 13 H 1.48495 * 109.47401 * 210.00066 * 11 9 7 14 14 H 1.48503 * 109.47092 * 329.99791 * 11 9 7 15 15 C 1.39298 * 120.55702 * 0.02562 * 5 4 3 16 16 Cl 1.73606 * 120.46236 * 180.02562 * 15 5 4 17 17 C 1.38451 * 119.07316 * 359.72760 * 15 5 4 18 18 H 1.09001 * 109.46953 * 90.00167 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99765 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00396 * 1 2 3 21 21 H 1.08001 * 119.55507 * 0.02562 * 3 2 1 22 22 H 0.96999 * 119.99529 * 180.02562 * 6 5 4 23 23 H 0.96999 * 119.99427 * 180.02562 * 10 9 7 24 24 H 1.08000 * 120.75718 * 180.27273 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2046 1.1926 0.0000 4 7 3.5233 1.2056 -0.0005 5 6 4.2294 0.0844 -0.0005 6 7 5.6167 0.1445 -0.0016 7 6 6.2493 1.3586 -0.0021 8 1 5.6693 2.2697 -0.0021 9 6 7.6361 1.4188 -0.0037 10 7 8.3427 0.3088 -0.0043 11 14 8.4992 3.0753 -0.0037 12 1 8.7296 3.5135 1.3963 13 1 9.8023 2.9546 -0.7054 14 1 7.6518 4.0750 -0.7021 15 6 3.5918 -1.1541 -0.0005 16 17 4.5194 -2.6216 0.0001 17 6 2.2080 -1.1984 0.0052 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6626 2.1268 0.0004 22 1 6.1376 -0.6737 -0.0020 23 1 9.3117 0.3508 -0.0050 24 1 1.6857 -2.1436 0.0098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155531206.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:19 Heat of formation + Delta-G solvation = 19.108078 kcal Electronic energy + Delta-G solvation = -11531.697738 eV Core-core repulsion = 9277.423282 eV Total energy + Delta-G solvation = -2254.274456 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.20086 -35.75648 -35.44910 -32.63015 -31.35206 -29.99378 -26.17538 -24.38702 -22.44919 -20.85767 -18.04400 -16.98622 -15.45003 -14.88741 -14.57154 -13.82156 -13.76982 -13.27898 -12.60210 -12.32060 -11.95816 -11.67371 -11.40846 -11.34892 -11.10667 -10.66919 -10.45307 -10.27194 -10.10889 -8.85587 -8.59595 -8.39411 -6.97241 -6.66936 -3.82620 2.08086 2.28272 3.05976 3.14394 3.15364 3.20851 3.99208 4.55912 4.78732 5.16287 5.52591 5.61705 5.71640 5.87916 6.07758 6.15695 6.42659 6.54558 6.77550 7.06735 7.29960 7.45709 7.77397 8.58377 8.87852 9.16137 9.60011 10.48259 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.009936 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.371213 B = 2817.323117 C = 3558.549737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.283 4.283 3 C 0.173 3.827 4 N -0.537 5.537 5 C 0.357 3.643 6 N -0.514 5.514 7 C -0.284 4.284 8 H 0.117 0.883 9 C 0.018 3.982 10 N -0.884 5.884 11 Si 0.940 3.060 12 H -0.275 1.275 13 H -0.281 1.281 14 H -0.266 1.266 15 C -0.196 4.196 16 Cl -0.096 7.096 17 C -0.008 4.008 18 H 0.049 0.951 19 H 0.049 0.951 20 H 0.053 0.947 21 H 0.140 0.860 22 H 0.411 0.589 23 H 0.278 0.722 24 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -1.200 0.014 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.292 4.292 3 C 0.006 3.994 4 N -0.257 5.257 5 C 0.112 3.888 6 N -0.119 5.119 7 C -0.415 4.415 8 H 0.134 0.866 9 C -0.187 4.187 10 N -0.520 5.520 11 Si 0.766 3.234 12 H -0.201 1.201 13 H -0.206 1.206 14 H -0.190 1.190 15 C -0.233 4.233 16 Cl -0.068 7.068 17 C -0.034 4.034 18 H 0.068 0.932 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.157 0.843 22 H 0.249 0.751 23 H 0.088 0.912 24 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.094 -0.454 0.009 7.108 hybrid contribution 0.404 -0.655 0.006 0.770 sum -6.690 -1.109 0.015 6.781 Atomic orbital electron populations 1.20281 0.91717 1.01067 1.00448 1.19923 0.96005 0.93234 1.20053 1.22132 0.89097 0.96561 0.91612 1.67333 1.07500 1.27704 1.23148 1.17850 0.86042 0.87202 0.97744 1.41178 1.00640 1.10063 1.59971 1.20068 0.89699 0.86231 1.45539 0.86563 1.25503 0.96571 0.99678 0.96931 1.69702 1.07837 1.27394 1.47091 0.85686 0.78428 0.80607 0.78673 1.20054 1.20649 1.18989 1.20795 0.92211 0.85504 1.24814 1.98270 1.74240 1.36467 1.97844 1.20692 0.90879 0.97767 0.94063 0.93240 0.93161 0.92801 0.84307 0.75057 0.91195 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.03 36.01 0.36 -0.66 14 2 C -0.28 -4.96 5.90 -104.43 -0.62 -5.57 14 3 C 0.17 3.31 10.85 -17.56 -0.19 3.12 14 4 N -0.54 -12.52 9.09 -12.40 -0.11 -12.63 14 5 C 0.36 8.63 7.43 -155.01 -1.15 7.48 14 6 N -0.51 -13.43 5.38 -11.13 -0.06 -13.49 14 7 C -0.28 -7.65 9.70 -15.08 -0.15 -7.80 14 8 H 0.12 3.13 7.08 -52.49 -0.37 2.76 14 9 C 0.02 0.46 5.50 -17.45 -0.10 0.36 14 10 N -0.88 -23.85 13.05 55.49 0.72 -23.13 14 11 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 14 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 14 14 H -0.27 -5.62 7.11 56.52 0.40 -5.22 14 15 C -0.20 -4.21 6.37 -39.11 -0.25 -4.46 14 16 Cl -0.10 -1.90 27.62 -51.86 -1.43 -3.34 14 17 C -0.01 -0.15 9.65 -39.28 -0.38 -0.53 14 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 14 19 H 0.05 0.60 8.09 -51.93 -0.42 0.18 14 20 H 0.05 0.63 8.09 -51.93 -0.42 0.21 14 21 H 0.14 2.18 8.06 -52.49 -0.42 1.76 14 22 H 0.41 10.79 6.55 -40.82 -0.27 10.53 14 23 H 0.28 7.01 8.31 -40.82 -0.34 6.67 14 24 H 0.12 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 233.83 15.07 3.52 3.52 Total: -1.00 -27.65 233.83 -6.73 -34.38 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -1.88 Total: 7.56 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.47 Total: -8.06 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 0.55 Total: -49.24 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -1.43 Total: -3.34 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -27.65 -6.73 -34.38 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531206.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.486 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds