Wall clock time and date at job start Sun Mar 29 2020 21:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38163 * 120.32341 * 2 1 4 4 N 1.31874 * 120.88666 * 180.02562 * 3 2 1 5 5 C 1.32500 * 121.63901 * 359.97438 * 4 3 2 6 6 N 1.38864 * 119.71972 * 179.97438 * 5 4 3 7 7 C 1.36896 * 120.00276 * 0.02562 * 6 5 4 8 8 H 1.07999 * 119.99979 * 359.97438 * 7 6 5 9 9 C 1.38814 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31577 * 119.99511 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00351 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47473 * 89.99677 * 11 9 7 13 13 H 1.48495 * 109.47401 * 210.00066 * 11 9 7 14 14 H 1.48503 * 109.47092 * 329.99791 * 11 9 7 15 15 C 1.39298 * 120.55702 * 0.02562 * 5 4 3 16 16 Cl 1.73606 * 120.46236 * 180.02562 * 15 5 4 17 17 C 1.38451 * 119.07316 * 359.72760 * 15 5 4 18 18 H 1.09001 * 109.46953 * 90.00167 * 1 2 3 19 19 H 1.09000 * 109.47318 * 209.99765 * 1 2 3 20 20 H 1.09000 * 109.47161 * 330.00396 * 1 2 3 21 21 H 1.08001 * 119.55507 * 0.02562 * 3 2 1 22 22 H 0.96999 * 119.99529 * 180.02562 * 6 5 4 23 23 H 0.96999 * 119.99427 * 180.02562 * 10 9 7 24 24 H 1.08000 * 120.75718 * 180.27273 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2046 1.1926 0.0000 4 7 3.5233 1.2056 -0.0005 5 6 4.2294 0.0844 -0.0005 6 7 5.6167 0.1445 -0.0016 7 6 6.2493 1.3586 -0.0021 8 1 5.6693 2.2697 -0.0021 9 6 7.6361 1.4188 -0.0037 10 7 8.3427 0.3088 -0.0043 11 14 8.4992 3.0753 -0.0037 12 1 8.7296 3.5135 1.3963 13 1 9.8023 2.9546 -0.7054 14 1 7.6518 4.0750 -0.7021 15 6 3.5918 -1.1541 -0.0005 16 17 4.5194 -2.6216 0.0001 17 6 2.2080 -1.1984 0.0052 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5138 21 1 1.6626 2.1268 0.0004 22 1 6.1376 -0.6737 -0.0020 23 1 9.3117 0.3508 -0.0050 24 1 1.6857 -2.1436 0.0098 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155531206.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:18 Heat of formation + Delta-G solvation = 2.816625 kcal Electronic energy + Delta-G solvation = -11532.404189 eV Core-core repulsion = 9277.423282 eV Total energy + Delta-G solvation = -2254.980907 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.88507 -37.39774 -37.15531 -34.31859 -33.05264 -31.56283 -27.77083 -26.05756 -24.10224 -22.45775 -19.87899 -18.67976 -17.19610 -16.43529 -16.28133 -15.50284 -15.44642 -14.91576 -13.85102 -13.80976 -13.45821 -13.11371 -13.09987 -12.79123 -12.74627 -12.46549 -12.10966 -11.93054 -11.74944 -10.60873 -10.24703 -10.05740 -8.68059 -8.52098 -5.78680 0.45218 0.68282 1.40550 1.42329 1.47407 1.54995 2.25930 2.83681 3.05411 3.33964 4.02036 4.13096 4.39666 4.54760 4.59332 5.07072 5.08105 5.18620 5.30165 5.41726 5.57930 5.75389 6.08428 6.71859 7.09760 7.34861 7.80552 8.65537 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.037010 B = 0.009936 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.371213 B = 2817.323117 C = 3558.549737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.250 4.250 3 C 0.155 3.845 4 N -0.569 5.569 5 C 0.349 3.651 6 N -0.552 5.552 7 C -0.308 4.308 8 H 0.105 0.895 9 C -0.031 4.031 10 N -0.927 5.927 11 Si 1.005 2.995 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.210 4.210 16 Cl -0.087 7.087 17 C -0.011 4.011 18 H 0.068 0.932 19 H 0.069 0.931 20 H 0.074 0.926 21 H 0.175 0.825 22 H 0.404 0.596 23 H 0.278 0.722 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -1.025 0.023 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.258 4.258 3 C -0.008 4.008 4 N -0.289 5.289 5 C 0.106 3.894 6 N -0.161 5.161 7 C -0.439 4.439 8 H 0.123 0.877 9 C -0.230 4.230 10 N -0.566 5.566 11 Si 0.827 3.173 12 H -0.196 1.196 13 H -0.201 1.201 14 H -0.187 1.187 15 C -0.247 4.247 16 Cl -0.059 7.059 17 C -0.037 4.037 18 H 0.087 0.913 19 H 0.088 0.912 20 H 0.093 0.907 21 H 0.192 0.808 22 H 0.241 0.759 23 H 0.087 0.913 24 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.140 -0.262 0.018 10.144 hybrid contribution 0.799 -0.827 0.002 1.150 sum -9.341 -1.089 0.020 9.405 Atomic orbital electron populations 1.20425 0.87678 1.03185 1.02311 1.20603 0.98762 0.92065 1.14340 1.22881 0.87997 0.99029 0.90874 1.67343 1.09601 1.28166 1.23839 1.18330 0.85956 0.88606 0.96479 1.41091 1.01198 1.09298 1.64545 1.20079 0.90289 0.86390 1.47097 0.87723 1.26304 0.96804 1.02965 0.96886 1.69796 1.07785 1.29059 1.50009 0.84738 0.77277 0.76583 0.78659 1.19632 1.20140 1.18702 1.21083 0.93555 0.85312 1.24759 1.98270 1.74369 1.35406 1.97827 1.21202 0.89762 0.99868 0.92880 0.91317 0.91243 0.90684 0.80768 0.75949 0.91310 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.03 71.24 0.71 -0.87 14 2 C -0.25 -7.66 5.90 -19.74 -0.12 -7.77 14 3 C 0.16 5.50 10.85 84.67 0.92 6.41 14 4 N -0.57 -26.21 9.09 -193.13 -1.76 -27.97 14 5 C 0.35 16.98 7.43 133.12 0.99 17.97 14 6 N -0.55 -29.97 5.38 -189.13 -1.02 -30.99 14 7 C -0.31 -17.30 9.70 84.04 0.82 -16.49 14 8 H 0.10 5.88 7.08 -2.91 -0.02 5.86 14 9 C -0.03 -1.65 5.50 84.87 0.47 -1.18 14 10 N -0.93 -52.35 13.05 21.65 0.28 -52.07 14 11 Si 1.00 42.80 29.55 68.60 2.03 44.83 14 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 13 H -0.28 -11.37 7.11 99.48 0.71 -10.66 14 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 14 15 C -0.21 -8.79 6.37 22.58 0.14 -8.64 14 16 Cl -0.09 -3.40 27.62 -2.72 -0.08 -3.47 14 17 C -0.01 -0.39 9.65 22.46 0.22 -0.17 14 18 H 0.07 1.24 8.14 -2.39 -0.02 1.22 14 19 H 0.07 1.22 8.09 -2.39 -0.02 1.20 14 20 H 0.07 1.28 8.09 -2.39 -0.02 1.26 14 21 H 0.18 4.79 8.06 -2.91 -0.02 4.76 14 22 H 0.40 22.25 6.55 -92.71 -0.61 21.64 14 23 H 0.28 14.64 8.31 -92.71 -0.77 13.87 14 24 H 0.15 4.12 8.06 -2.91 -0.02 4.10 14 Total: -1.00 -62.02 233.83 4.23 -57.79 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.62 Total: 22.62 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.15 Total: -10.74 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -2.49 Total: -111.02 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.08 Total: -3.47 kcal Total: -62.02 4.23 -57.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155531206.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.604 kcal (2) G-P(sol) polarization free energy of solvation -62.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds