Wall clock time and date at job start Sun Mar 29 2020 21:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38878 * 120.74901 * 2 1 4 4 C 1.38122 * 119.34660 * 179.97438 * 3 2 1 5 5 N 1.31906 * 120.89234 * 359.73613 * 4 3 2 6 6 C 1.32469 * 121.63554 * 0.52911 * 5 4 3 7 7 N 1.38865 * 119.72441 * 179.74816 * 6 5 4 8 8 C 1.36902 * 119.99355 * 359.73106 * 7 6 5 9 9 H 1.07999 * 120.00402 * 359.97438 * 8 7 6 10 10 C 1.38815 * 119.99740 * 180.02562 * 8 7 6 11 11 N 1.31576 * 119.99763 * 359.71811 * 10 8 7 12 12 Si 1.86795 * 120.00115 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47071 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47211 * 119.99797 * 12 10 8 15 15 H 1.48493 * 109.47327 * 239.99664 * 12 10 8 16 16 C 1.38405 * 120.75384 * 179.97438 * 2 1 3 17 17 Cl 1.73605 * 120.46384 * 0.02562 * 16 2 1 18 18 H 1.08998 * 109.47414 * 270.02828 * 1 2 3 19 19 H 1.09006 * 109.47048 * 30.02920 * 1 2 3 20 20 H 1.09003 * 109.47162 * 150.02039 * 1 2 3 21 21 H 1.07997 * 120.32794 * 359.95206 * 3 2 1 22 22 H 1.07997 * 119.55425 * 179.97438 * 4 3 2 23 23 H 0.96999 * 120.00237 * 179.72482 * 7 6 5 24 24 H 0.97000 * 119.99542 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2170 1.1935 0.0000 4 6 3.5979 1.1597 0.0005 5 7 4.2472 0.0116 0.0063 6 6 3.6076 -1.1484 0.0013 7 7 4.3311 -2.3337 0.0023 8 6 5.6997 -2.3000 0.0029 9 1 6.2166 -1.3518 0.0022 10 6 6.4231 -3.4848 0.0034 11 7 5.7933 -4.6400 0.0090 12 14 8.2905 -3.4390 0.0035 13 1 8.7509 -2.0272 0.0024 14 1 8.8024 -4.1262 1.2164 15 1 8.8026 -4.1272 -1.2085 16 6 2.2147 -1.1894 0.0005 17 17 1.3788 -2.7110 0.0005 18 1 -0.3634 0.0005 1.0276 19 1 -0.3633 0.8898 -0.5143 20 1 -0.3634 -0.8902 -0.5135 21 1 1.6947 2.1388 -0.0008 22 1 4.1534 2.0859 0.0001 23 1 3.8668 -3.1854 0.0027 24 1 6.2988 -5.4679 0.0097 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533591.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:23 Heat of formation + Delta-G solvation = 3.533649 kcal Electronic energy + Delta-G solvation = -11614.639821 eV Core-core repulsion = 9359.690007 eV Total energy + Delta-G solvation = -2254.949814 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.85637 -37.29052 -37.19691 -34.44115 -33.55777 -30.23469 -28.56365 -26.48880 -23.88162 -22.26319 -19.84590 -18.19659 -17.21813 -16.96290 -16.25043 -15.50131 -15.38075 -15.05794 -13.95787 -13.75252 -13.50930 -13.27031 -13.03900 -12.73331 -12.53424 -12.44108 -12.06564 -12.05876 -11.76547 -10.65960 -10.03124 -10.01258 -8.78707 -8.51606 -5.79295 0.47924 0.70631 1.40760 1.46410 1.46551 1.56438 2.26138 2.86065 3.06176 3.36254 3.95586 4.09427 4.44471 4.51139 4.80379 4.83932 4.90647 5.18183 5.27930 5.40558 5.56556 5.76343 6.10198 6.72997 7.12340 7.35944 7.83114 8.66216 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.043091 B = 0.009996 C = 0.008149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.635641 B = 2800.507045 C = 3434.996701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.013 3.987 3 C -0.279 4.279 4 C 0.154 3.846 5 N -0.578 5.578 6 C 0.355 3.645 7 N -0.553 5.553 8 C -0.307 4.307 9 H 0.105 0.895 10 C -0.031 4.031 11 N -0.928 5.928 12 Si 1.004 2.996 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.275 1.275 16 C -0.219 4.219 17 Cl -0.085 7.085 18 H 0.087 0.913 19 H 0.096 0.904 20 H 0.066 0.934 21 H 0.162 0.838 22 H 0.179 0.821 23 H 0.403 0.597 24 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 8.238 -0.005 11.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.005 3.995 3 C -0.305 4.305 4 C -0.008 4.008 5 N -0.300 5.300 6 C 0.112 3.888 7 N -0.162 5.162 8 C -0.438 4.438 9 H 0.122 0.878 10 C -0.230 4.230 11 N -0.567 5.567 12 Si 0.827 3.173 13 H -0.185 1.185 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.256 4.256 17 Cl -0.057 7.057 18 H 0.105 0.895 19 H 0.115 0.885 20 H 0.084 0.916 21 H 0.180 0.820 22 H 0.195 0.805 23 H 0.240 0.760 24 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.167 7.696 0.004 9.862 hybrid contribution -0.225 -1.005 0.003 1.030 sum -6.392 6.691 0.008 9.253 Atomic orbital electron populations 1.20868 0.88061 1.04063 1.03668 1.20205 0.97826 0.90322 0.91184 1.21645 0.94500 0.98072 1.16259 1.22977 0.92884 0.94874 0.90059 1.67352 1.40417 0.97514 1.24684 1.18357 0.86897 0.87671 0.95837 1.41100 1.06274 1.04215 1.64574 1.20113 0.81566 0.95085 1.47007 0.87750 1.26300 1.05775 0.93977 0.96933 1.69802 1.38502 0.98213 1.50154 0.84685 0.75773 0.78831 0.77978 1.18529 1.20025 1.20013 1.20988 0.90618 0.87786 1.26175 1.98253 1.77794 1.31842 1.97796 0.89485 0.88508 0.91556 0.82036 0.80451 0.75993 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 9.68 71.24 0.69 -2.00 14 2 C 0.01 0.43 5.92 -19.67 -0.12 0.31 14 3 C -0.28 -8.53 9.81 22.40 0.22 -8.31 14 4 C 0.15 5.45 11.17 84.65 0.95 6.39 14 5 N -0.58 -26.77 9.09 -193.13 -1.76 -28.53 14 6 C 0.36 17.42 7.43 133.14 0.99 18.41 14 7 N -0.55 -30.15 5.38 -189.11 -1.02 -31.17 14 8 C -0.31 -17.33 9.70 84.04 0.82 -16.52 14 9 H 0.10 5.91 7.08 -2.91 -0.02 5.89 14 10 C -0.03 -1.67 5.50 84.87 0.47 -1.21 14 11 N -0.93 -52.46 13.05 21.65 0.28 -52.18 14 12 Si 1.00 42.98 29.55 68.60 2.03 45.01 14 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 14 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 15 H -0.27 -11.38 7.11 99.48 0.71 -10.68 14 16 C -0.22 -9.22 6.36 22.58 0.14 -9.07 14 17 Cl -0.08 -3.32 26.10 -2.72 -0.07 -3.39 14 18 H 0.09 1.90 8.14 -2.39 -0.02 1.88 14 19 H 0.10 1.79 8.10 -2.38 -0.02 1.77 14 20 H 0.07 1.68 7.02 -2.39 -0.02 1.67 14 21 H 0.16 3.52 8.06 -2.91 -0.02 3.50 14 22 H 0.18 4.76 8.06 -2.91 -0.02 4.73 14 23 H 0.40 22.33 6.55 -92.71 -0.61 21.72 14 24 H 0.28 14.62 8.31 -92.71 -0.77 13.85 14 Total: -1.00 -63.00 231.39 4.24 -58.76 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.62 Total: 23.50 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.15 Total: -12.00 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -2.49 Total: -111.87 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 17 Polarization: -3.32 SS G_CDS: -0.07 Total: -3.39 kcal Total: -63.00 4.24 -58.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533591.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.290 kcal (2) G-P(sol) polarization free energy of solvation -62.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds