Wall clock time and date at job start Sun Mar 29 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38503 * 120.46214 * 2 1 4 4 Cl 1.73599 * 120.75864 * 0.02562 * 3 2 1 5 5 C 1.38985 * 118.47543 * 180.29943 * 3 2 1 6 6 C 1.38115 * 119.32341 * 359.47531 * 5 3 2 7 7 N 1.31880 * 120.87482 * 0.53603 * 6 5 3 8 8 C 1.32539 * 121.65760 * 359.71705 * 7 6 5 9 9 N 1.38854 * 119.70850 * 179.97438 * 8 7 6 10 10 C 1.36920 * 119.99428 * 0.02567 * 9 8 7 11 11 H 1.07999 * 120.00200 * 359.97438 * 10 9 8 12 12 C 1.38809 * 119.99612 * 179.97438 * 10 9 8 13 13 N 1.31566 * 119.99939 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 120.00137 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47628 * 89.99899 * 14 12 10 16 16 H 1.48512 * 109.47038 * 209.99756 * 14 12 10 17 17 H 1.48500 * 109.46980 * 329.99454 * 14 12 10 18 18 H 1.09001 * 109.47618 * 89.99964 * 1 2 3 19 19 H 1.09005 * 109.47401 * 209.99930 * 1 2 3 20 20 H 1.09000 * 109.46983 * 329.99729 * 1 2 3 21 21 H 1.08001 * 120.33275 * 179.70280 * 5 3 2 22 22 H 1.07995 * 119.56332 * 180.22969 * 6 5 3 23 23 H 0.96994 * 120.00527 * 180.02562 * 9 8 7 24 24 H 0.97005 * 120.00344 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1938 0.0000 4 17 1.3734 2.7154 0.0007 5 6 3.5981 1.1457 -0.0064 6 6 4.2324 -0.0812 -0.0015 7 7 3.5377 -1.2022 -0.0014 8 6 2.2123 -1.1992 -0.0005 9 7 1.5215 -2.4037 -0.0010 10 6 2.2096 -3.5875 -0.0020 11 1 3.2896 -3.5843 -0.0027 12 6 1.5190 -4.7916 -0.0019 13 7 2.1801 -5.9291 -0.0034 14 14 -0.3490 -4.7970 -0.0013 15 1 -0.8446 -4.7982 -1.4012 16 1 -0.8403 -6.0112 0.6986 17 1 -0.8473 -3.5861 0.6992 18 1 -0.3634 0.0000 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 4.1755 2.0584 -0.0114 22 1 5.3116 -0.1231 -0.0026 23 1 0.5516 -2.4066 -0.0007 24 1 1.6976 -6.7706 -0.0030 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163181864.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:21 Heat of formation + Delta-G solvation = 13.443592 kcal Electronic energy + Delta-G solvation = -11661.987524 eV Core-core repulsion = 9407.467437 eV Total energy + Delta-G solvation = -2254.520087 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.08074 -37.74742 -36.99304 -34.43193 -33.74512 -31.24556 -28.10836 -26.56042 -23.23739 -22.85892 -20.39490 -18.69337 -17.42005 -16.44055 -16.17409 -15.65602 -15.43281 -14.93595 -14.28516 -14.02939 -13.80841 -13.49816 -13.35585 -12.95914 -12.69623 -12.40679 -12.02220 -11.98011 -11.79280 -10.76056 -10.08856 -10.07972 -8.92395 -8.43715 -5.82607 0.39863 0.54452 1.10103 1.24814 1.32708 1.35606 2.17128 2.78577 2.83390 3.29616 3.88915 4.06638 4.19398 4.45622 4.66979 4.72911 4.74749 5.06112 5.17571 5.32030 5.52638 5.68450 6.13363 6.54731 7.02592 7.23583 7.73068 8.72183 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.046973 B = 0.009493 C = 0.007931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.945774 B = 2948.926237 C = 3529.726815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.241 4.241 3 C 0.052 3.948 4 Cl -0.053 7.053 5 C -0.267 4.267 6 C 0.156 3.844 7 N -0.579 5.579 8 C 0.370 3.630 9 N -0.576 5.576 10 C -0.298 4.298 11 H 0.084 0.916 12 C -0.018 4.018 13 N -0.928 5.928 14 Si 0.946 3.054 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.243 1.243 18 H 0.076 0.924 19 H 0.054 0.946 20 H 0.085 0.915 21 H 0.158 0.842 22 H 0.179 0.821 23 H 0.394 0.606 24 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 14.188 -0.013 14.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.251 4.251 3 C 0.018 3.982 4 Cl -0.024 7.024 5 C -0.292 4.292 6 C -0.006 4.006 7 N -0.299 5.299 8 C 0.129 3.871 9 N -0.191 5.191 10 C -0.428 4.428 11 H 0.102 0.898 12 C -0.217 4.217 13 N -0.567 5.567 14 Si 0.767 3.233 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.167 1.167 18 H 0.094 0.906 19 H 0.073 0.927 20 H 0.104 0.896 21 H 0.176 0.824 22 H 0.196 0.804 23 H 0.233 0.767 24 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.037 12.990 -0.014 13.603 hybrid contribution -1.157 0.234 0.017 1.180 sum -5.194 13.224 0.003 14.207 Atomic orbital electron populations 1.20583 0.89229 1.02972 1.02814 1.19863 0.97991 0.90572 1.16722 1.20807 0.92750 0.85851 0.98809 1.98320 1.78489 1.29003 1.96549 1.21668 0.92299 1.00233 1.15035 1.22827 1.00599 0.86106 0.91022 1.67264 1.07040 1.32879 1.22720 1.18179 0.88523 0.85529 0.94859 1.40984 1.06838 1.02444 1.68867 1.19293 0.93842 0.82595 1.47111 0.89771 1.25871 1.04296 0.94125 0.97435 1.69823 1.38235 0.98164 1.50527 0.85609 0.78220 0.79620 0.79838 1.18345 1.19583 1.16746 0.90565 0.92713 0.89595 0.82426 0.80434 0.76742 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.97 9.22 71.23 0.66 -2.31 14 2 C -0.24 -8.88 5.92 -19.59 -0.12 -8.99 14 3 C 0.05 1.68 6.36 22.51 0.14 1.82 14 4 Cl -0.05 -1.35 27.49 -2.72 -0.07 -1.43 14 5 C -0.27 -8.18 9.93 22.42 0.22 -7.96 14 6 C 0.16 5.50 11.17 84.66 0.95 6.45 14 7 N -0.58 -26.48 9.09 -193.28 -1.76 -28.24 14 8 C 0.37 16.63 7.41 133.07 0.99 17.62 14 9 N -0.58 -27.67 5.13 -189.23 -0.97 -28.64 14 10 C -0.30 -16.84 10.19 84.04 0.86 -15.99 14 11 H 0.08 5.40 7.31 -2.91 -0.02 5.38 14 12 C -0.02 -1.00 5.50 84.87 0.47 -0.53 14 13 N -0.93 -54.81 13.96 21.65 0.30 -54.51 14 14 Si 0.95 39.62 27.73 68.60 1.90 41.52 14 15 H -0.26 -10.39 7.11 99.48 0.71 -9.69 14 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 14 17 H -0.24 -9.05 6.52 99.48 0.65 -8.40 14 18 H 0.08 2.08 8.14 -2.39 -0.02 2.06 14 19 H 0.05 1.67 6.57 -2.38 -0.02 1.65 14 20 H 0.09 2.22 7.01 -2.39 -0.02 2.20 14 21 H 0.16 3.73 8.06 -2.91 -0.02 3.71 14 22 H 0.18 4.94 8.06 -2.91 -0.02 4.91 14 23 H 0.39 16.87 3.73 -92.71 -0.35 16.53 14 24 H 0.28 15.15 8.31 -92.70 -0.77 14.38 14 Total: -1.00 -63.33 227.03 4.39 -58.94 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.83 Total: 22.26 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.16 Total: -9.90 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -2.43 Total: -111.39 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.52 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.43 kcal Total: -63.33 4.39 -58.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163181864.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.379 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds