Wall clock time and date at job start Sun Mar 29 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35811 * 116.99569 * 2 1 4 4 C 1.39417 * 120.81223 * 359.97438 * 3 2 1 5 5 C 1.37939 * 119.28921 * 180.02562 * 4 3 2 6 6 N 1.31974 * 120.96314 * 359.74505 * 5 4 3 7 7 C 1.32569 * 121.76615 * 0.52325 * 6 5 4 8 8 N 1.38945 * 119.69095 * 179.75038 * 7 6 5 9 9 C 1.36893 * 120.00027 * 359.73178 * 8 7 6 10 10 H 1.07999 * 120.00188 * 359.97438 * 9 8 7 11 11 C 1.38805 * 119.99948 * 180.02562 * 9 8 7 12 12 N 1.31585 * 119.99556 * 359.71801 * 11 9 8 13 13 Si 1.86795 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47071 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47211 * 119.99794 * 13 11 9 16 16 H 1.48493 * 109.47327 * 239.99662 * 13 11 9 17 17 C 1.39079 * 120.80857 * 180.02562 * 3 2 1 18 18 F 1.35102 * 120.50706 * 359.97438 * 17 3 2 19 19 H 1.08997 * 109.47376 * 60.00182 * 1 2 3 20 20 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47306 * 299.99822 * 1 2 3 22 22 H 1.07999 * 120.35199 * 0.04227 * 4 3 2 23 23 H 1.08005 * 119.51619 * 179.97438 * 5 4 3 24 24 H 0.96999 * 119.99780 * 179.72566 * 8 7 6 25 25 H 0.97000 * 119.99330 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3028 2.3900 -0.0005 5 6 1.9613 3.6020 -0.0011 6 7 3.2799 3.6583 0.0040 7 6 4.0252 2.5620 -0.0006 8 7 5.4104 2.6715 -0.0002 9 6 5.9993 3.9073 -0.0007 10 1 5.3873 4.7972 -0.0018 11 6 7.3830 4.0167 -0.0009 12 7 8.1286 2.9325 0.0050 13 14 8.1866 5.7030 -0.0023 14 1 7.1357 6.7521 -0.0037 15 1 9.0316 5.8497 1.2101 16 1 9.0315 5.8477 -1.2149 17 6 3.4332 1.3026 -0.0005 18 9 4.1949 0.1868 -0.0005 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.2233 2.3553 -0.0003 23 1 1.3896 4.5183 -0.0019 24 1 5.9600 1.8723 0.0005 25 1 9.0956 3.0090 0.0053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182062.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:08 Heat of formation + Delta-G solvation = -44.269801 kcal Electronic energy + Delta-G solvation = -13630.619741 eV Core-core repulsion = 10945.260639 eV Total energy + Delta-G solvation = -2685.359102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.65353 -39.47322 -37.76676 -35.11956 -32.00206 -30.26432 -28.67112 -27.08863 -24.74697 -22.45337 -21.36991 -18.24668 -17.89219 -16.46967 -16.02465 -15.60504 -15.59725 -14.60138 -14.37891 -13.98288 -13.66101 -13.27054 -12.69867 -12.67865 -11.91635 -11.60117 -11.48027 -11.16358 -10.85229 -10.52331 -10.36859 -10.32389 -8.88551 -8.49611 -7.99973 -7.10024 -6.70027 -3.85671 2.09161 2.26888 3.12998 3.14562 3.21299 3.55061 3.99755 4.55149 4.75248 5.13799 5.24807 5.28944 5.36333 5.56725 5.60150 5.82927 5.93858 6.50640 6.74877 6.83622 7.10431 7.33933 7.62744 7.98550 8.55375 8.86959 9.11457 9.56009 10.45035 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.059326 B = 0.008187 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.856366 B = 3419.096294 C = 3875.807165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.315 6.315 3 C 0.179 3.821 4 C -0.375 4.375 5 C 0.188 3.812 6 N -0.548 5.548 7 C 0.354 3.646 8 N -0.509 5.509 9 C -0.281 4.281 10 H 0.120 0.880 11 C 0.017 3.983 12 N -0.882 5.882 13 Si 0.942 3.058 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.109 4.109 18 F -0.148 7.148 19 H 0.054 0.946 20 H 0.092 0.908 21 H 0.054 0.946 22 H 0.121 0.879 23 H 0.144 0.856 24 H 0.411 0.589 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -0.986 -0.025 10.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C 0.127 3.873 4 C -0.404 4.404 5 C 0.022 3.978 6 N -0.270 5.270 7 C 0.108 3.892 8 N -0.112 5.112 9 C -0.412 4.412 10 H 0.138 0.862 11 C -0.187 4.187 12 N -0.518 5.518 13 Si 0.768 3.232 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.139 4.139 18 F -0.127 7.127 19 H 0.072 0.928 20 H 0.111 0.889 21 H 0.072 0.928 22 H 0.139 0.861 23 H 0.162 0.838 24 H 0.248 0.752 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.924 -0.344 -0.015 8.931 hybrid contribution 0.099 -0.574 -0.005 0.582 sum -8.825 -0.918 -0.019 8.872 Atomic orbital electron populations 1.22954 0.78880 1.03006 1.01376 1.86025 1.21025 1.27059 1.88625 1.18835 0.90055 0.84684 0.93752 1.21157 0.99544 0.92151 1.27498 1.21956 0.89403 0.96113 0.90341 1.67302 1.06131 1.28758 1.24848 1.17854 0.86340 0.86645 0.98371 1.41037 1.00494 1.10032 1.59659 1.20143 0.90205 0.85529 1.45330 0.86246 1.25544 0.96332 1.00049 0.96813 1.69717 1.06699 1.28635 1.46716 0.85598 0.79082 0.80568 0.77997 1.18684 1.20415 1.20421 1.16857 0.85862 0.82450 1.28730 1.91332 1.75181 1.50290 1.95941 0.92774 0.88934 0.92784 0.86083 0.83837 0.75170 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.84 101.05 0.99 1.40 15 2 O -0.32 -5.80 10.41 -19.15 -0.20 -6.00 15 3 C 0.18 3.69 6.73 -38.83 -0.26 3.43 15 4 C -0.38 -6.75 9.11 -39.25 -0.36 -7.11 15 5 C 0.19 3.57 11.17 -17.60 -0.20 3.38 15 6 N -0.55 -12.75 9.09 -12.43 -0.11 -12.86 15 7 C 0.35 8.78 7.43 -154.92 -1.15 7.63 15 8 N -0.51 -13.45 5.42 -11.13 -0.06 -13.51 15 9 C -0.28 -7.51 9.70 -15.08 -0.15 -7.66 15 10 H 0.12 3.18 7.08 -52.49 -0.37 2.81 15 11 C 0.02 0.45 5.50 -17.45 -0.10 0.35 15 12 N -0.88 -23.72 13.05 55.49 0.72 -22.99 15 13 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 15 14 H -0.26 -5.47 7.11 56.52 0.40 -5.06 15 15 H -0.28 -5.85 7.11 56.52 0.40 -5.44 15 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 17 C -0.11 -2.58 7.36 -38.93 -0.29 -2.86 15 18 F -0.15 -3.57 16.53 2.25 0.04 -3.53 15 19 H 0.05 0.60 7.71 -51.93 -0.40 0.20 15 20 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.05 0.60 7.71 -51.93 -0.40 0.20 15 22 H 0.12 1.75 6.46 -52.49 -0.34 1.41 15 23 H 0.14 2.14 8.06 -52.48 -0.42 1.72 15 24 H 0.41 11.03 7.35 -40.82 -0.30 10.73 15 25 H 0.28 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 233.04 15.07 3.51 3.51 Total: -1.00 -29.24 233.04 -4.42 -33.66 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -1.79 Total: 8.21 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.50 Total: -1.45 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.55 Total: -49.36 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.20 Total: -6.00 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.53 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.24 -4.42 -33.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182062.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.612 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds