Wall clock time and date at job start Sun Mar 29 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35811 * 116.99569 * 2 1 4 4 C 1.39417 * 120.81223 * 359.97438 * 3 2 1 5 5 C 1.37939 * 119.28921 * 180.02562 * 4 3 2 6 6 N 1.31974 * 120.96314 * 359.74505 * 5 4 3 7 7 C 1.32569 * 121.76615 * 0.52325 * 6 5 4 8 8 N 1.38945 * 119.69095 * 179.75038 * 7 6 5 9 9 C 1.36893 * 120.00027 * 359.73178 * 8 7 6 10 10 H 1.07999 * 120.00188 * 359.97438 * 9 8 7 11 11 C 1.38805 * 119.99948 * 180.02562 * 9 8 7 12 12 N 1.31585 * 119.99556 * 359.71801 * 11 9 8 13 13 Si 1.86795 * 120.00110 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47071 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47211 * 119.99794 * 13 11 9 16 16 H 1.48493 * 109.47327 * 239.99662 * 13 11 9 17 17 C 1.39079 * 120.80857 * 180.02562 * 3 2 1 18 18 F 1.35102 * 120.50706 * 359.97438 * 17 3 2 19 19 H 1.08997 * 109.47376 * 60.00182 * 1 2 3 20 20 H 1.09002 * 109.47141 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47306 * 299.99822 * 1 2 3 22 22 H 1.07999 * 120.35199 * 0.04227 * 4 3 2 23 23 H 1.08005 * 119.51619 * 179.97438 * 5 4 3 24 24 H 0.96999 * 119.99780 * 179.72566 * 8 7 6 25 25 H 0.97000 * 119.99330 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2101 0.0000 4 6 1.3028 2.3900 -0.0005 5 6 1.9613 3.6020 -0.0011 6 7 3.2799 3.6583 0.0040 7 6 4.0252 2.5620 -0.0006 8 7 5.4104 2.6715 -0.0002 9 6 5.9993 3.9073 -0.0007 10 1 5.3873 4.7972 -0.0018 11 6 7.3830 4.0167 -0.0009 12 7 8.1286 2.9325 0.0050 13 14 8.1866 5.7030 -0.0023 14 1 7.1357 6.7521 -0.0037 15 1 9.0316 5.8497 1.2101 16 1 9.0315 5.8477 -1.2149 17 6 3.4332 1.3026 -0.0005 18 9 4.1949 0.1868 -0.0005 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 0.2233 2.3553 -0.0003 23 1 1.3896 4.5183 -0.0019 24 1 5.9600 1.8723 0.0005 25 1 9.0956 3.0090 0.0053 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182062.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:08 Heat of formation + Delta-G solvation = -64.170034 kcal Electronic energy + Delta-G solvation = -13631.482680 eV Core-core repulsion = 10945.260639 eV Total energy + Delta-G solvation = -2686.222041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.48115 -41.07851 -39.34191 -36.88835 -33.83373 -31.89079 -30.35948 -28.33916 -26.53768 -24.11804 -23.02746 -20.08336 -19.46254 -18.13625 -17.78877 -17.28148 -17.08091 -16.32600 -15.95481 -15.47075 -15.38921 -14.79460 -14.47971 -14.27051 -13.59912 -13.13632 -13.09354 -12.50906 -12.44087 -12.16312 -12.03432 -11.96781 -10.70263 -10.20563 -9.61422 -8.89921 -8.55702 -5.83567 0.41749 0.61086 1.42297 1.48189 1.58747 2.12002 2.33364 2.80914 3.01021 3.29566 3.56462 4.02249 4.16670 4.27745 4.47128 4.50348 4.72685 4.92580 5.11931 5.20135 5.33420 5.58282 5.86594 6.44082 6.66038 7.06388 7.27465 7.72904 8.62071 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.059326 B = 0.008187 C = 0.007223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.856366 B = 3419.096294 C = 3875.807165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.184 3.816 4 C -0.342 4.342 5 C 0.185 3.815 6 N -0.575 5.575 7 C 0.353 3.647 8 N -0.544 5.544 9 C -0.305 4.305 10 H 0.113 0.887 11 C -0.031 4.031 12 N -0.927 5.927 13 Si 1.010 2.990 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.149 4.149 18 F -0.160 7.160 19 H 0.072 0.928 20 H 0.121 0.879 21 H 0.072 0.928 22 H 0.172 0.828 23 H 0.193 0.807 24 H 0.401 0.599 25 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.296 -0.204 -0.028 13.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.131 3.869 4 C -0.369 4.369 5 C 0.021 3.979 6 N -0.298 5.298 7 C 0.109 3.891 8 N -0.150 5.150 9 C -0.435 4.435 10 H 0.131 0.869 11 C -0.230 4.230 12 N -0.565 5.565 13 Si 0.833 3.167 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.178 4.178 18 F -0.140 7.140 19 H 0.090 0.910 20 H 0.139 0.861 21 H 0.090 0.910 22 H 0.189 0.811 23 H 0.210 0.790 24 H 0.236 0.764 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.278 0.441 -0.019 12.286 hybrid contribution 0.567 -0.986 -0.004 1.138 sum -11.711 -0.546 -0.022 11.724 Atomic orbital electron populations 1.23453 0.75284 1.05738 1.03047 1.86031 1.24601 1.26027 1.87943 1.19031 0.89214 0.86571 0.92108 1.21748 1.01892 0.90519 1.22696 1.22865 0.88183 0.98640 0.88181 1.67375 1.08227 1.28515 1.25716 1.18254 0.86297 0.87724 0.96805 1.40999 1.01049 1.09405 1.63573 1.20214 0.90788 0.85553 1.46977 0.86911 1.26431 0.96439 1.03664 0.96476 1.69820 1.06780 1.30544 1.49373 0.84600 0.77998 0.76175 0.77971 1.18007 1.20017 1.20004 1.17284 0.87575 0.81953 1.31035 1.91287 1.75801 1.50671 1.96240 0.90955 0.86088 0.90969 0.81076 0.79031 0.76446 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.84 113.37 1.12 1.47 15 2 O -0.33 -11.24 10.41 -91.43 -0.95 -12.20 15 3 C 0.18 7.11 6.73 22.76 0.15 7.26 15 4 C -0.34 -10.63 9.11 22.48 0.20 -10.43 15 5 C 0.18 6.28 11.17 84.60 0.94 7.23 15 6 N -0.57 -26.16 9.09 -193.24 -1.76 -27.92 15 7 C 0.35 17.80 7.43 133.04 0.99 18.79 15 8 N -0.54 -30.17 5.42 -189.14 -1.02 -31.20 15 9 C -0.31 -17.01 9.70 84.04 0.82 -16.19 15 10 H 0.11 6.20 7.08 -2.91 -0.02 6.18 15 11 C -0.03 -1.65 5.50 84.87 0.47 -1.18 15 12 N -0.93 -52.36 13.05 21.65 0.28 -52.07 15 13 Si 1.01 42.11 29.55 68.60 2.03 44.14 15 14 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 17 C -0.15 -7.05 7.36 22.69 0.17 -6.89 15 18 F -0.16 -8.00 16.53 44.97 0.74 -7.25 15 19 H 0.07 1.18 7.71 -2.39 -0.02 1.16 15 20 H 0.12 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.07 1.18 7.71 -2.39 -0.02 1.16 15 22 H 0.17 3.64 6.46 -2.91 -0.02 3.62 15 23 H 0.19 4.61 8.06 -2.91 -0.02 4.58 15 24 H 0.40 23.04 7.35 -92.71 -0.68 22.35 15 25 H 0.28 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -66.84 233.04 4.73 -62.12 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.55 Total: 24.31 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.86 Total: 0.07 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -2.50 Total: -111.19 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.95 Total: -12.20 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 0.74 Total: -7.25 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -66.84 4.73 -62.12 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182062.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.051 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds