Wall clock time and date at job start Sun Mar 29 2020 21:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35801 * 116.99923 * 2 1 4 4 C 1.38908 * 120.80848 * 0.26766 * 3 2 1 5 5 C 1.38983 * 119.05184 * 180.23714 * 4 3 2 6 6 N 1.38932 * 119.66568 * 179.77241 * 5 4 3 7 7 C 1.36908 * 119.99480 * 359.72375 * 6 5 4 8 8 H 1.08002 * 120.00481 * 0.02562 * 7 6 5 9 9 C 1.38803 * 119.99780 * 179.72349 * 7 6 5 10 10 N 1.31581 * 120.00139 * 180.27463 * 9 7 6 11 11 Si 1.86800 * 120.00065 * 0.27765 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99557 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00077 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99899 * 11 9 7 15 15 N 1.32568 * 120.67567 * 359.49209 * 5 4 3 16 16 C 1.31990 * 121.77127 * 0.25715 * 15 5 4 17 17 C 1.38116 * 120.88694 * 0.02562 * 16 15 5 18 18 F 1.35102 * 120.37938 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.47030 * 299.98692 * 1 2 3 20 20 H 1.08993 * 109.47881 * 59.99394 * 1 2 3 21 21 H 1.09008 * 109.47107 * 179.97438 * 1 2 3 22 22 H 1.08002 * 120.47711 * 0.02562 * 4 3 2 23 23 H 0.97000 * 120.00647 * 179.72160 * 6 5 4 24 24 H 0.96996 * 119.99866 * 180.02562 * 10 9 7 25 25 H 1.07991 * 119.55357 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3055 2.3855 0.0056 5 6 1.9740 3.6040 0.0003 6 7 1.2465 4.7875 0.0010 7 6 -0.1221 4.7497 0.0011 8 1 -0.6361 3.7998 0.0011 9 6 -0.8490 5.9321 0.0076 10 7 -2.1643 5.8958 0.0131 11 14 0.0399 7.5751 0.0084 12 1 0.2695 8.0143 -1.3915 13 1 -0.7879 8.5854 0.7149 14 1 1.3450 7.4314 0.7024 15 7 3.2990 3.6484 0.0003 16 6 4.0312 2.5502 0.0001 17 6 3.4383 1.3028 -0.0006 18 9 4.1977 0.1854 -0.0002 19 1 -0.3633 0.5136 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0277 -0.0005 22 1 0.2259 2.3532 0.0104 23 1 1.7081 5.6407 0.0015 24 1 -2.6723 6.7221 0.0173 25 1 5.1083 2.6282 -0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182348.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:10 Heat of formation + Delta-G solvation = -39.498963 kcal Electronic energy + Delta-G solvation = -13629.533915 eV Core-core repulsion = 10944.381691 eV Total energy + Delta-G solvation = -2685.152223 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.82443 -39.69629 -37.82559 -35.35642 -32.27093 -30.56210 -28.73621 -27.17550 -24.68233 -22.57940 -21.45572 -18.77937 -17.85979 -16.69035 -16.21208 -15.61238 -15.47184 -14.73012 -14.42310 -13.88213 -13.81586 -13.45662 -13.09536 -12.73095 -12.28314 -11.71454 -11.53758 -11.16808 -11.02895 -10.78068 -10.34067 -10.22145 -8.98185 -8.80948 -8.24710 -7.21217 -6.70301 -4.02406 1.94393 2.12092 2.95627 2.97792 3.01590 3.57848 3.85221 4.34554 4.39738 4.99294 5.10669 5.28460 5.46396 5.51894 5.68041 5.84843 6.04202 6.22712 6.51571 6.72671 7.08780 7.30965 7.56247 7.85639 8.29127 8.53394 8.98806 9.25875 10.39398 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.041336 B = 0.009323 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.217137 B = 3002.499243 C = 3664.568843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.177 3.823 4 C -0.314 4.314 5 C 0.385 3.615 6 N -0.551 5.551 7 C -0.307 4.307 8 H 0.120 0.880 9 C 0.047 3.953 10 N -0.864 5.864 11 Si 0.884 3.116 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.263 1.263 15 N -0.570 5.570 16 C 0.168 3.832 17 C -0.114 4.114 18 F -0.151 7.151 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.143 0.857 23 H 0.386 0.614 24 H 0.281 0.719 25 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -4.693 -0.026 6.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.124 3.876 4 C -0.343 4.343 5 C 0.142 3.858 6 N -0.159 5.159 7 C -0.436 4.436 8 H 0.138 0.862 9 C -0.160 4.160 10 N -0.499 5.499 11 Si 0.709 3.291 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.188 1.188 15 N -0.293 5.293 16 C 0.003 3.997 17 C -0.143 4.143 18 F -0.131 7.131 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.113 0.887 22 H 0.161 0.839 23 H 0.221 0.779 24 H 0.091 0.909 25 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.449 -3.850 -0.024 5.883 hybrid contribution -0.204 0.358 0.015 0.412 sum 4.245 -3.492 -0.009 5.497 Atomic orbital electron populations 1.23053 0.78234 1.03245 1.02216 1.86018 1.21582 1.26582 1.88309 1.19027 0.90570 0.84726 0.93235 1.21124 1.01129 0.90064 1.21937 1.17798 0.87065 0.86296 0.94599 1.41056 1.05838 1.03948 1.65077 1.19422 0.78581 0.96960 1.48663 0.86244 1.25029 0.95538 0.98796 0.96630 1.69666 1.04812 1.29464 1.45934 0.86538 0.79970 0.82991 0.79558 1.19067 1.19698 1.18779 1.67128 1.05438 1.30733 1.26009 1.21968 0.99260 0.85103 0.93334 1.17433 0.85725 0.84020 1.27138 1.91345 1.75114 1.50505 1.96088 0.92290 0.92291 0.88660 0.83942 0.77862 0.90877 0.82671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.84 101.05 0.99 1.39 15 2 O -0.31 -5.82 10.42 -19.12 -0.20 -6.02 15 3 C 0.18 3.61 6.74 -38.83 -0.26 3.35 15 4 C -0.31 -6.73 8.33 -39.06 -0.33 -7.05 15 5 C 0.38 8.68 7.61 -155.00 -1.18 7.50 15 6 N -0.55 -12.85 5.25 -11.18 -0.06 -12.91 15 7 C -0.31 -7.71 10.02 -15.08 -0.15 -7.86 15 8 H 0.12 3.12 5.88 -52.49 -0.31 2.81 15 9 C 0.05 1.17 5.50 -17.45 -0.10 1.08 15 10 N -0.86 -22.78 13.97 55.49 0.77 -22.00 15 11 Si 0.88 18.63 27.74 -169.99 -4.72 13.91 15 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 14 H -0.26 -5.34 6.51 56.52 0.37 -4.98 15 15 N -0.57 -12.11 10.39 -12.43 -0.13 -12.24 15 16 C 0.17 3.16 11.16 -17.53 -0.20 2.97 15 17 C -0.11 -2.28 7.35 -39.12 -0.29 -2.56 15 18 F -0.15 -2.94 17.17 2.25 0.04 -2.90 15 19 H 0.06 0.85 7.70 -51.93 -0.40 0.45 15 20 H 0.06 0.84 7.72 -51.93 -0.40 0.44 15 21 H 0.10 1.06 8.14 -51.92 -0.42 0.64 15 22 H 0.14 3.02 4.33 -52.49 -0.23 2.79 15 23 H 0.39 8.60 5.87 -40.82 -0.24 8.36 15 24 H 0.28 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.16 2.33 8.06 -52.49 -0.42 1.91 15 LS Contribution 228.21 15.07 3.44 3.44 Total: -1.00 -27.43 228.21 -3.94 -31.37 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -1.59 Total: 8.53 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.50 Total: -1.19 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.59 Total: -47.15 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.20 Total: -6.02 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.72 Total: 13.91 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -27.43 -3.94 -31.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182348.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.127 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds