Wall clock time and date at job start Sun Mar 29 2020 21:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35801 * 116.99923 * 2 1 4 4 C 1.38908 * 120.80848 * 0.26766 * 3 2 1 5 5 C 1.38983 * 119.05184 * 180.23714 * 4 3 2 6 6 N 1.38932 * 119.66568 * 179.77241 * 5 4 3 7 7 C 1.36908 * 119.99480 * 359.72375 * 6 5 4 8 8 H 1.08002 * 120.00481 * 0.02562 * 7 6 5 9 9 C 1.38803 * 119.99780 * 179.72349 * 7 6 5 10 10 N 1.31581 * 120.00139 * 180.27463 * 9 7 6 11 11 Si 1.86800 * 120.00065 * 0.27765 * 9 7 6 12 12 H 1.48498 * 109.47118 * 89.99557 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00077 * 11 9 7 14 14 H 1.48507 * 109.46904 * 329.99899 * 11 9 7 15 15 N 1.32568 * 120.67567 * 359.49209 * 5 4 3 16 16 C 1.31990 * 121.77127 * 0.25715 * 15 5 4 17 17 C 1.38116 * 120.88694 * 0.02562 * 16 15 5 18 18 F 1.35102 * 120.37938 * 180.02562 * 17 16 15 19 19 H 1.09002 * 109.47030 * 299.98692 * 1 2 3 20 20 H 1.08993 * 109.47881 * 59.99394 * 1 2 3 21 21 H 1.09008 * 109.47107 * 179.97438 * 1 2 3 22 22 H 1.08002 * 120.47711 * 0.02562 * 4 3 2 23 23 H 0.97000 * 120.00647 * 179.72160 * 6 5 4 24 24 H 0.96996 * 119.99866 * 180.02562 * 10 9 7 25 25 H 1.07991 * 119.55357 * 179.97438 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3055 2.3855 0.0056 5 6 1.9740 3.6040 0.0003 6 7 1.2465 4.7875 0.0010 7 6 -0.1221 4.7497 0.0011 8 1 -0.6361 3.7998 0.0011 9 6 -0.8490 5.9321 0.0076 10 7 -2.1643 5.8958 0.0131 11 14 0.0399 7.5751 0.0084 12 1 0.2695 8.0143 -1.3915 13 1 -0.7879 8.5854 0.7149 14 1 1.3450 7.4314 0.7024 15 7 3.2990 3.6484 0.0003 16 6 4.0312 2.5502 0.0001 17 6 3.4383 1.3028 -0.0006 18 9 4.1977 0.1854 -0.0002 19 1 -0.3633 0.5136 0.8901 20 1 -0.3634 0.5139 -0.8898 21 1 -0.3634 -1.0277 -0.0005 22 1 0.2259 2.3532 0.0104 23 1 1.7081 5.6407 0.0015 24 1 -2.6723 6.7221 0.0173 25 1 5.1083 2.6282 -0.0003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182348.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:10 Heat of formation + Delta-G solvation = -57.336167 kcal Electronic energy + Delta-G solvation = -13630.307394 eV Core-core repulsion = 10944.381691 eV Total energy + Delta-G solvation = -2685.925703 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.42233 -41.31061 -39.37526 -37.09291 -34.09880 -32.17696 -30.40744 -28.53479 -26.47564 -24.15475 -23.14125 -20.54274 -19.46584 -18.32657 -17.85649 -17.13369 -17.10514 -16.37721 -15.91631 -15.53507 -15.37738 -14.96674 -14.78740 -14.44112 -14.03913 -13.19833 -13.12381 -12.57990 -12.51817 -12.44580 -12.00495 -11.96131 -10.78898 -10.47568 -9.85439 -8.92397 -8.55495 -5.94510 0.32454 0.46471 1.29977 1.32521 1.37344 2.12730 2.16641 2.63515 2.67803 3.18308 3.49597 3.74372 4.08284 4.30455 4.32788 4.53971 4.56557 4.66832 4.86359 5.06638 5.36941 5.64089 5.75318 6.26507 6.48179 6.79042 7.16954 7.50619 8.57598 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.041336 B = 0.009323 C = 0.007639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.217137 B = 3002.499243 C = 3664.568843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.320 6.320 3 C 0.176 3.824 4 C -0.327 4.327 5 C 0.381 3.619 6 N -0.565 5.565 7 C -0.316 4.316 8 H 0.096 0.904 9 C 0.000 4.000 10 N -0.911 5.911 11 Si 0.946 3.054 12 H -0.261 1.261 13 H -0.269 1.269 14 H -0.251 1.251 15 N -0.577 5.577 16 C 0.177 3.823 17 C -0.113 4.113 18 F -0.145 7.145 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.134 0.866 22 H 0.138 0.862 23 H 0.390 0.610 24 H 0.283 0.717 25 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -5.062 -0.012 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.231 6.231 3 C 0.122 3.878 4 C -0.355 4.355 5 C 0.140 3.860 6 N -0.176 5.176 7 C -0.445 4.445 8 H 0.114 0.886 9 C -0.202 4.202 10 N -0.548 5.548 11 Si 0.768 3.232 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.175 1.175 15 N -0.300 5.300 16 C 0.013 3.987 17 C -0.141 4.141 18 F -0.125 7.125 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.152 0.848 22 H 0.155 0.845 23 H 0.226 0.774 24 H 0.093 0.907 25 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 6.278 -4.275 -0.009 7.595 hybrid contribution -0.628 0.164 0.007 0.649 sum 5.650 -4.111 -0.002 6.987 Atomic orbital electron populations 1.23352 0.76107 1.05772 1.02029 1.86021 1.23702 1.25597 1.87823 1.19199 0.91108 0.85041 0.92402 1.21159 1.01162 0.90399 1.22737 1.18119 0.87850 0.86433 0.93591 1.40875 1.05051 1.04327 1.67384 1.19278 0.79541 0.96393 1.49312 0.88620 1.25725 0.96068 1.02063 0.96319 1.69766 1.06269 1.30437 1.48333 0.85587 0.79241 0.78590 0.79776 1.18542 1.19406 1.17506 1.67231 1.04734 1.31748 1.26321 1.22653 1.01029 0.83947 0.91030 1.17685 0.85685 0.84672 1.26037 1.91367 1.74849 1.50302 1.95969 0.92500 0.92496 0.84788 0.84484 0.77429 0.90698 0.78332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.84 113.37 1.12 1.71 15 2 O -0.32 -11.33 10.42 -91.32 -0.95 -12.28 15 3 C 0.18 6.91 6.74 22.76 0.15 7.06 15 4 C -0.33 -13.87 8.33 22.61 0.19 -13.68 15 5 C 0.38 16.89 7.61 133.00 1.01 17.90 15 6 N -0.56 -26.24 5.25 -189.27 -0.99 -27.24 15 7 C -0.32 -16.21 10.02 84.04 0.84 -15.37 15 8 H 0.10 5.22 5.88 -2.91 -0.02 5.21 15 9 C 0.00 0.02 5.50 84.87 0.47 0.49 15 10 N -0.91 -49.35 13.97 21.65 0.30 -49.04 15 11 Si 0.95 38.29 27.74 68.60 1.90 40.19 15 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 13 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 14 H -0.25 -9.53 6.51 99.48 0.65 -8.88 15 15 N -0.58 -23.23 10.39 -193.25 -2.01 -25.24 15 16 C 0.18 6.07 11.16 84.64 0.94 7.01 15 17 C -0.11 -4.19 7.35 22.57 0.17 -4.02 15 18 F -0.15 -5.20 17.17 44.97 0.77 -4.43 15 19 H 0.06 1.60 7.70 -2.39 -0.02 1.58 15 20 H 0.06 1.60 7.72 -2.39 -0.02 1.58 15 21 H 0.13 2.63 8.14 -2.38 -0.02 2.61 15 22 H 0.14 5.94 4.33 -2.91 -0.01 5.93 15 23 H 0.39 17.02 5.87 -92.71 -0.54 16.47 15 24 H 0.28 14.22 8.31 -92.71 -0.77 13.45 15 25 H 0.20 5.01 8.06 -2.92 -0.02 4.99 15 Total: -1.00 -58.07 228.21 4.55 -53.52 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.64 Total: 23.41 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.89 Total: 1.10 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -2.70 Total: -101.52 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.95 Total: -12.28 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.77 Total: -4.43 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.90 Total: 40.19 kcal Total: -58.07 4.55 -53.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182348.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.817 kcal (2) G-P(sol) polarization free energy of solvation -58.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds