Wall clock time and date at job start Sun Mar 29 2020 21:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35730 * 117.00050 * 2 1 4 4 C 1.38620 * 119.61807 * 180.02562 * 3 2 1 5 5 C 1.39294 * 119.03101 * 179.74533 * 4 3 2 6 6 N 1.39073 * 120.85346 * 180.25226 * 5 4 3 7 7 C 1.36857 * 120.00032 * 0.22238 * 6 5 4 8 8 H 1.08006 * 119.99748 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31567 * 119.99610 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00294 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47029 * 90.00070 * 11 9 7 13 13 H 1.48503 * 109.47201 * 209.99750 * 11 9 7 14 14 H 1.48495 * 109.47224 * 329.99970 * 11 9 7 15 15 C 1.39911 * 118.28910 * 0.46748 * 5 4 3 16 16 F 1.35104 * 120.42618 * 179.80297 * 15 5 4 17 17 C 1.37924 * 119.14134 * 359.53246 * 15 5 4 18 18 N 1.32124 * 120.88747 * 0.22822 * 17 15 5 19 19 H 1.09001 * 109.47267 * 299.99697 * 1 2 3 20 20 H 1.08997 * 109.47051 * 60.00257 * 1 2 3 21 21 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.48289 * 0.02562 * 4 3 2 23 23 H 0.96995 * 120.00095 * 180.22356 * 6 5 4 24 24 H 0.97002 * 119.99990 * 179.97438 * 10 9 7 25 25 H 1.07996 * 119.55035 * 180.24695 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4300 1.2727 -0.0005 5 6 4.0496 2.5202 -0.0059 6 7 5.4362 2.6278 -0.0119 7 6 6.2101 1.4991 -0.0172 8 1 5.7441 0.5248 -0.0162 9 6 7.5941 1.6065 -0.0226 10 7 8.1618 2.7935 -0.0232 11 14 8.6505 0.0660 -0.0290 12 1 8.9248 -0.3403 -1.4308 13 1 9.9333 0.3425 0.6662 14 1 7.9334 -1.0289 0.6724 15 6 3.2412 3.6621 -0.0006 16 9 3.7967 4.8937 -0.0015 17 6 1.8699 3.5142 0.0000 18 7 1.3171 2.3142 0.0000 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 4.0198 0.3679 -0.0014 23 1 5.8547 3.5028 -0.0124 24 1 9.1289 2.8686 -0.0267 25 1 1.2397 4.3912 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187067.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:06 Heat of formation + Delta-G solvation = -50.776512 kcal Electronic energy + Delta-G solvation = -13570.710810 eV Core-core repulsion = 10885.069556 eV Total energy + Delta-G solvation = -2685.641255 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.78831 -39.51606 -37.28915 -35.54393 -32.40794 -29.67966 -28.90905 -26.54025 -25.21729 -22.40592 -21.41575 -18.35739 -17.84032 -16.54151 -16.35699 -15.39712 -15.11242 -14.58554 -14.54477 -13.97163 -13.68064 -13.14534 -12.69456 -12.44312 -11.96130 -11.69543 -11.46326 -11.27398 -10.97560 -10.56148 -10.47648 -10.40202 -9.14512 -8.73824 -7.63749 -7.25512 -6.81558 -4.02466 2.05521 2.34660 3.06774 3.07485 3.11306 3.74433 3.89211 4.49914 4.94365 4.97949 5.11983 5.31522 5.62644 5.69735 5.85101 6.02768 6.13505 6.61031 6.65111 6.97788 7.08261 7.23804 7.55930 8.07913 8.48372 8.82373 8.99445 9.21202 10.33032 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.009648 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.391419 B = 2901.559559 C = 3737.803231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.315 6.315 3 C 0.341 3.659 4 C -0.280 4.280 5 C 0.214 3.786 6 N -0.520 5.520 7 C -0.308 4.308 8 H 0.110 0.890 9 C 0.027 3.973 10 N -0.876 5.876 11 Si 0.940 3.060 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.264 1.264 15 C -0.104 4.104 16 F -0.153 7.153 17 C 0.143 3.857 18 N -0.608 5.608 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.084 0.916 22 H 0.135 0.865 23 H 0.408 0.592 24 H 0.281 0.719 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.137 -2.451 0.026 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.223 6.223 3 C 0.166 3.834 4 C -0.309 4.309 5 C 0.082 3.918 6 N -0.120 5.120 7 C -0.438 4.438 8 H 0.128 0.872 9 C -0.179 4.179 10 N -0.511 5.511 11 Si 0.765 3.235 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.189 1.189 15 C -0.135 4.135 16 F -0.132 7.132 17 C -0.010 4.010 18 N -0.339 5.339 19 H 0.071 0.929 20 H 0.071 0.929 21 H 0.102 0.898 22 H 0.152 0.848 23 H 0.244 0.756 24 H 0.091 0.909 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.393 -2.828 0.029 7.915 hybrid contribution 1.566 0.191 -0.013 1.578 sum -5.827 -2.636 0.016 6.396 Atomic orbital electron populations 1.22648 0.78766 1.01557 1.01957 1.86184 1.21662 1.25790 1.88702 1.19282 0.88594 0.83897 0.91591 1.19815 0.91030 0.96994 1.23097 1.17561 0.84700 0.91881 0.97680 1.40961 1.00628 1.10054 1.60378 1.19913 0.88235 0.87515 1.48127 0.87195 1.25474 0.97308 0.98974 0.96145 1.69690 1.12527 1.23116 1.45780 0.85695 0.78826 0.80101 0.78882 1.19811 1.20405 1.18861 1.17827 0.92293 0.78956 1.24380 1.91341 1.85964 1.40134 1.95788 1.21627 0.89884 0.94363 0.95129 1.67181 1.39160 0.97547 1.30055 0.92911 0.92904 0.89795 0.84757 0.75610 0.90897 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.66 10.38 101.05 1.05 1.71 15 2 O -0.32 -5.94 10.48 -18.90 -0.20 -6.14 15 3 C 0.34 7.17 7.48 -17.20 -0.13 7.04 15 4 C -0.28 -6.30 9.30 -39.05 -0.36 -6.66 15 5 C 0.21 5.01 6.67 -83.56 -0.56 4.45 15 6 N -0.52 -13.00 5.43 -9.39 -0.05 -13.06 15 7 C -0.31 -7.77 9.57 -15.09 -0.14 -7.92 15 8 H 0.11 2.66 5.76 -52.48 -0.30 2.36 15 9 C 0.03 0.67 5.50 -17.45 -0.10 0.58 15 10 N -0.88 -22.77 13.05 55.49 0.72 -22.04 15 11 Si 0.94 19.12 29.55 -169.99 -5.02 14.10 15 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 13 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 14 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 15 C -0.10 -2.27 7.36 -39.07 -0.29 -2.56 15 16 F -0.15 -3.30 16.76 2.25 0.04 -3.26 15 17 C 0.14 2.81 11.15 -17.54 -0.20 2.61 15 18 N -0.61 -12.31 9.21 -13.37 -0.12 -12.44 15 19 H 0.05 0.74 8.10 -51.93 -0.42 0.32 15 20 H 0.05 0.74 8.10 -51.93 -0.42 0.32 15 21 H 0.08 0.92 8.14 -51.93 -0.42 0.49 15 22 H 0.13 3.00 6.08 -52.49 -0.32 2.68 15 23 H 0.41 10.45 7.48 -40.82 -0.31 10.15 15 24 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 25 H 0.15 2.37 8.06 -52.49 -0.42 1.95 15 LS Contribution 233.24 15.07 3.51 3.51 Total: -1.00 -26.92 233.24 -3.59 -30.51 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -1.75 Total: 9.56 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.72 Total: -0.75 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.55 Total: -47.53 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.20 Total: -6.14 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -26.92 -3.59 -30.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187067.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.262 kcal (2) G-P(sol) polarization free energy of solvation -26.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds