Wall clock time and date at job start Sun Mar 29 2020 21:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35730 * 117.00050 * 2 1 4 4 C 1.38620 * 119.61807 * 180.02562 * 3 2 1 5 5 C 1.39294 * 119.03101 * 179.74533 * 4 3 2 6 6 N 1.39073 * 120.85346 * 180.25226 * 5 4 3 7 7 C 1.36857 * 120.00032 * 0.22238 * 6 5 4 8 8 H 1.08006 * 119.99748 * 359.97438 * 7 6 5 9 9 C 1.38817 * 120.00232 * 180.02562 * 7 6 5 10 10 N 1.31567 * 119.99610 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00294 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47029 * 90.00070 * 11 9 7 13 13 H 1.48503 * 109.47201 * 209.99750 * 11 9 7 14 14 H 1.48495 * 109.47224 * 329.99970 * 11 9 7 15 15 C 1.39911 * 118.28910 * 0.46748 * 5 4 3 16 16 F 1.35104 * 120.42618 * 179.80297 * 15 5 4 17 17 C 1.37924 * 119.14134 * 359.53246 * 15 5 4 18 18 N 1.32124 * 120.88747 * 0.22822 * 17 15 5 19 19 H 1.09001 * 109.47267 * 299.99697 * 1 2 3 20 20 H 1.08997 * 109.47051 * 60.00257 * 1 2 3 21 21 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 22 22 H 1.08000 * 120.48289 * 0.02562 * 4 3 2 23 23 H 0.96995 * 120.00095 * 180.22356 * 6 5 4 24 24 H 0.97002 * 119.99990 * 179.97438 * 10 9 7 25 25 H 1.07996 * 119.55035 * 180.24695 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4300 1.2727 -0.0005 5 6 4.0496 2.5202 -0.0059 6 7 5.4362 2.6278 -0.0119 7 6 6.2101 1.4991 -0.0172 8 1 5.7441 0.5248 -0.0162 9 6 7.5941 1.6065 -0.0226 10 7 8.1618 2.7935 -0.0232 11 14 8.6505 0.0660 -0.0290 12 1 8.9248 -0.3403 -1.4308 13 1 9.9333 0.3425 0.6662 14 1 7.9334 -1.0289 0.6724 15 6 3.2412 3.6621 -0.0006 16 9 3.7967 4.8937 -0.0015 17 6 1.8699 3.5142 0.0000 18 7 1.3171 2.3142 0.0000 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 4.0198 0.3679 -0.0014 23 1 5.8547 3.5028 -0.0124 24 1 9.1289 2.8686 -0.0267 25 1 1.2397 4.3912 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187067.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:05 Heat of formation + Delta-G solvation = -69.662437 kcal Electronic energy + Delta-G solvation = -13571.529766 eV Core-core repulsion = 10885.069556 eV Total energy + Delta-G solvation = -2686.460210 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.50220 -41.16400 -38.89977 -37.26920 -34.22408 -31.33947 -30.64120 -27.86102 -27.02816 -24.11881 -23.08410 -20.17066 -19.45701 -18.24131 -18.05198 -16.91171 -16.85757 -16.21377 -16.14359 -15.62108 -15.34890 -14.80541 -14.28136 -14.08479 -13.69577 -13.35653 -13.05591 -12.61426 -12.58552 -12.35476 -12.11202 -11.83425 -10.95006 -10.43805 -9.33041 -9.03765 -8.64075 -5.94261 0.36321 0.61351 1.41062 1.48131 1.54794 2.17103 2.31175 2.75976 3.15086 3.16584 3.50256 3.68028 4.23544 4.46162 4.57635 4.58542 4.84056 4.88409 4.96435 5.18132 5.29011 5.50145 5.80105 6.49430 6.61842 7.13191 7.17116 7.33736 8.52606 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.032879 B = 0.009648 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.391419 B = 2901.559559 C = 3737.803231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.323 6.323 3 C 0.346 3.654 4 C -0.296 4.296 5 C 0.207 3.793 6 N -0.545 5.545 7 C -0.331 4.331 8 H 0.112 0.888 9 C -0.018 4.018 10 N -0.916 5.916 11 Si 1.007 2.993 12 H -0.268 1.268 13 H -0.276 1.276 14 H -0.257 1.257 15 C -0.122 4.122 16 F -0.154 7.154 17 C 0.160 3.840 18 N -0.597 5.597 19 H 0.056 0.944 20 H 0.056 0.944 21 H 0.121 0.879 22 H 0.130 0.870 23 H 0.399 0.601 24 H 0.282 0.718 25 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -3.326 0.033 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.231 6.231 3 C 0.170 3.830 4 C -0.325 4.325 5 C 0.078 3.922 6 N -0.146 5.146 7 C -0.460 4.460 8 H 0.130 0.870 9 C -0.220 4.220 10 N -0.553 5.553 11 Si 0.828 3.172 12 H -0.194 1.194 13 H -0.201 1.201 14 H -0.181 1.181 15 C -0.152 4.152 16 F -0.134 7.134 17 C 0.006 3.994 18 N -0.327 5.327 19 H 0.075 0.925 20 H 0.075 0.925 21 H 0.140 0.860 22 H 0.147 0.853 23 H 0.234 0.766 24 H 0.092 0.908 25 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.190 -3.728 0.035 9.918 hybrid contribution 1.769 0.472 -0.016 1.831 sum -7.422 -3.256 0.020 8.104 Atomic orbital electron populations 1.23024 0.75994 1.04288 1.02264 1.86187 1.24352 1.24510 1.88061 1.19378 0.88335 0.84930 0.90333 1.19924 0.92067 0.96594 1.23937 1.18000 0.84592 0.93054 0.96570 1.40953 1.01138 1.09520 1.63023 1.20173 0.88928 0.87772 1.49177 0.86993 1.26375 0.98130 1.01858 0.95608 1.69786 1.12759 1.25009 1.47768 0.84707 0.76970 0.76554 0.78922 1.19368 1.20141 1.18101 1.18075 0.93110 0.78570 1.25425 1.91337 1.86149 1.39983 1.95901 1.22269 0.89379 0.95407 0.92361 1.67356 1.38761 0.97562 1.29058 0.92548 0.92541 0.86040 0.85263 0.76648 0.90808 0.79326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.97 10.38 113.37 1.18 2.15 15 2 O -0.32 -11.38 10.48 -90.53 -0.95 -12.33 15 3 C 0.35 13.88 7.48 84.71 0.63 14.51 15 4 C -0.30 -13.22 9.30 22.62 0.21 -13.00 15 5 C 0.21 9.75 6.67 38.65 0.26 10.01 15 6 N -0.54 -28.00 5.43 -183.63 -1.00 -29.00 15 7 C -0.33 -17.15 9.57 84.05 0.80 -16.35 15 8 H 0.11 5.55 5.76 -2.91 -0.02 5.53 15 9 C -0.02 -0.92 5.50 84.87 0.47 -0.45 15 10 N -0.92 -48.99 13.05 21.65 0.28 -48.71 15 11 Si 1.01 39.54 29.55 68.60 2.03 41.57 15 12 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 13 H -0.28 -10.61 7.11 99.48 0.71 -9.91 15 14 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 15 C -0.12 -5.19 7.36 22.60 0.17 -5.02 15 16 F -0.15 -6.58 16.76 44.97 0.75 -5.82 15 17 C 0.16 5.80 11.15 84.57 0.94 6.74 15 18 N -0.60 -22.40 9.21 -309.03 -2.84 -25.24 15 19 H 0.06 1.38 8.10 -2.39 -0.02 1.36 15 20 H 0.06 1.39 8.10 -2.39 -0.02 1.37 15 21 H 0.12 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.13 5.83 6.08 -2.91 -0.02 5.81 15 23 H 0.40 21.29 7.48 -92.71 -0.69 20.60 15 24 H 0.28 14.07 8.31 -92.71 -0.77 13.30 15 25 H 0.19 5.24 8.06 -2.91 -0.02 5.22 15 Total: -1.00 -57.52 233.24 3.47 -54.05 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.54 Total: 26.91 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.66 Total: -1.42 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.56 Total: -102.95 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.95 Total: -12.33 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.75 Total: -5.82 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -57.52 3.47 -54.05 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187067.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.612 kcal (2) G-P(sol) polarization free energy of solvation -57.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds