Wall clock time and date at job start Sun Mar 29 2020 21:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31772 * 119.66544 * 2 1 4 4 C 1.31874 * 121.83294 * 180.27942 * 3 2 1 5 5 C 1.38447 * 120.93884 * 359.97438 * 4 3 2 6 6 Cl 1.73604 * 120.38394 * 180.02562 * 5 4 3 7 7 C 1.38545 * 119.23119 * 359.97438 * 5 4 3 8 8 C 1.39065 * 119.67170 * 180.27858 * 2 1 3 9 9 N 1.39319 * 120.49500 * 359.69691 * 8 2 1 10 10 C 1.36846 * 119.99663 * 180.02562 * 9 8 2 11 11 H 1.07996 * 120.00344 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00137 * 180.02562 * 10 9 8 13 13 N 1.31600 * 119.99693 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00238 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47021 * 59.99848 * 14 12 10 16 16 H 1.48496 * 109.47076 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46851 * 299.99726 * 14 12 10 18 18 H 1.09001 * 109.47230 * 269.71955 * 1 2 3 19 19 H 1.08998 * 109.47438 * 29.72787 * 1 2 3 20 20 H 1.09001 * 109.46784 * 149.72223 * 1 2 3 21 21 H 1.08004 * 119.53545 * 179.97438 * 4 3 2 22 22 H 1.08003 * 120.83842 * 180.02562 * 7 5 4 23 23 H 0.97000 * 120.00347 * 0.02562 * 9 8 2 24 24 H 0.96996 * 119.99269 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1592 1.1450 0.0000 4 6 3.4770 1.1949 -0.0055 5 6 4.2331 0.0352 -0.0109 6 17 5.9672 0.1177 -0.0174 7 6 3.5899 -1.1919 -0.0101 8 6 2.1954 -1.2083 -0.0059 9 7 1.5023 -2.4169 -0.0054 10 6 2.1901 -3.5999 -0.0107 11 1 3.2700 -3.5968 -0.0156 12 6 1.4997 -4.8041 -0.0108 13 7 0.1837 -4.8079 -0.0052 14 14 2.4385 -6.4190 -0.0187 15 1 3.2976 -6.4981 1.1900 16 1 1.4768 -7.5505 -0.0168 17 1 3.2873 -6.4921 -1.2350 18 1 -0.3634 -0.0050 1.0277 19 1 -0.3634 0.8924 -0.5096 20 1 -0.3633 -0.8875 -0.5182 21 1 3.9735 2.1541 -0.0057 22 1 4.1542 -2.1128 -0.0139 23 1 0.5324 -2.4198 -0.0013 24 1 -0.2987 -5.6494 -0.0049 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163187660.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:13 Heat of formation + Delta-G solvation = 17.481823 kcal Electronic energy + Delta-G solvation = -11576.701860 eV Core-core repulsion = 9322.356884 eV Total energy + Delta-G solvation = -2254.344976 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.35306 -36.14443 -35.56146 -32.41741 -31.82124 -29.26004 -26.52250 -25.14307 -21.74926 -21.19508 -18.18458 -16.84312 -15.60637 -15.16343 -14.68386 -13.92975 -13.68181 -13.52022 -12.46269 -12.28053 -11.79624 -11.72534 -11.63030 -11.31861 -11.09336 -10.69185 -10.66834 -10.55895 -10.39153 -9.10322 -8.70566 -8.32833 -7.00910 -6.80924 -3.97503 1.95034 2.32100 2.74716 3.05449 3.06606 3.07319 3.87318 4.48548 4.95329 4.98469 5.32316 5.65915 5.82846 6.11331 6.22750 6.27300 6.31819 6.61285 6.89277 6.96058 7.11902 7.36248 7.63182 8.49570 8.89589 9.06783 9.24105 10.34076 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.010257 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.301356 B = 2729.088370 C = 3637.244030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.005 3.995 3 N -0.423 5.423 4 C -0.037 4.037 5 C -0.016 4.016 6 Cl -0.095 7.095 7 C -0.189 4.189 8 C 0.167 3.833 9 N -0.534 5.534 10 C -0.307 4.307 11 H 0.104 0.896 12 C 0.026 3.974 13 N -0.881 5.881 14 Si 0.936 3.064 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.269 1.269 18 H 0.062 0.938 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.139 0.861 22 H 0.133 0.867 23 H 0.405 0.595 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 3.613 -0.026 5.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.144 4.144 3 N -0.132 5.132 4 C -0.197 4.197 5 C -0.045 4.045 6 Cl -0.067 7.067 7 C -0.221 4.221 8 C 0.040 3.960 9 N -0.135 5.135 10 C -0.437 4.437 11 H 0.122 0.878 12 C -0.179 4.179 13 N -0.517 5.517 14 Si 0.761 3.239 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.194 1.194 18 H 0.080 0.920 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.156 0.844 22 H 0.151 0.849 23 H 0.243 0.757 24 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.028 3.877 -0.025 4.920 hybrid contribution 0.723 -1.700 0.000 1.848 sum 3.751 2.177 -0.025 4.337 Atomic orbital electron populations 1.20355 0.90108 1.02048 1.01688 1.20347 0.95796 0.87097 1.11204 1.67080 1.08749 1.28233 1.09166 1.21589 0.88822 0.95753 1.13534 1.21673 0.82954 0.95948 1.03950 1.98297 1.12543 1.98777 1.97086 1.20575 0.92724 0.96489 1.12278 1.18414 0.91289 0.87187 0.99115 1.41133 1.08541 1.01759 1.62042 1.19780 0.93261 0.82634 1.48049 0.87786 1.25387 0.95818 1.00220 0.96494 1.69667 1.06214 1.29214 1.46568 0.85818 0.78932 0.79711 0.79414 1.19437 1.20457 1.19436 0.91956 0.91487 0.91896 0.84385 0.84947 0.75714 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.74 36.01 0.35 -1.15 14 2 C 0.01 0.11 6.81 -82.31 -0.56 -0.45 14 3 N -0.42 -8.86 10.26 -9.23 -0.09 -8.95 14 4 C -0.04 -0.74 10.98 -17.46 -0.19 -0.93 14 5 C -0.02 -0.31 6.34 -39.39 -0.25 -0.56 14 6 Cl -0.10 -1.60 28.99 -51.86 -1.50 -3.11 14 7 C -0.19 -4.07 9.21 -39.01 -0.36 -4.43 14 8 C 0.17 3.74 6.61 -83.69 -0.55 3.18 14 9 N -0.53 -12.60 5.34 -9.51 -0.05 -12.65 14 10 C -0.31 -7.54 9.57 -15.11 -0.14 -7.68 14 11 H 0.10 2.46 5.74 -52.49 -0.30 2.16 14 12 C 0.03 0.63 5.50 -17.44 -0.10 0.54 14 13 N -0.88 -22.24 13.05 55.49 0.72 -21.51 14 14 Si 0.94 18.92 29.55 -169.99 -5.02 13.90 14 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 14 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 14 18 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 19 H 0.07 1.09 8.14 -51.93 -0.42 0.66 14 20 H 0.06 1.11 6.56 -51.93 -0.34 0.77 14 21 H 0.14 2.38 8.06 -52.48 -0.42 1.96 14 22 H 0.13 2.83 6.08 -52.48 -0.32 2.51 14 23 H 0.41 9.52 5.91 -40.82 -0.24 9.28 14 24 H 0.28 6.67 8.31 -40.82 -0.34 6.33 14 LS Contribution 230.21 15.07 3.47 3.47 Total: -1.00 -25.35 230.21 -5.89 -31.24 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.61 Total: 9.10 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.80 Total: -11.48 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.58 Total: -43.12 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -1.50 Total: -3.11 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -25.35 -5.89 -31.24 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187660.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.718 kcal (2) G-P(sol) polarization free energy of solvation -25.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds