Wall clock time and date at job start Sun Mar 29 2020 21:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36874 * 119.99686 * 2 1 4 4 H 1.07998 * 120.00072 * 149.10917 * 3 2 1 5 5 C 1.38794 * 120.00173 * 329.12126 * 3 2 1 6 6 N 1.31592 * 120.00163 * 145.09562 * 5 3 2 7 7 Si 1.86802 * 119.99537 * 325.36504 * 5 3 2 8 8 H 1.48504 * 109.47383 * 269.72885 * 7 5 3 9 9 H 1.48504 * 109.47274 * 29.72835 * 7 5 3 10 10 H 1.48498 * 109.47213 * 149.72952 * 7 5 3 11 11 C 1.39062 * 120.00339 * 180.02562 * 2 1 3 12 12 C 1.39135 * 119.68018 * 189.87346 * 11 2 1 13 13 C 1.38362 * 119.12775 * 179.74924 * 12 11 2 14 14 C 1.39036 * 118.49716 * 0.51402 * 13 12 11 15 15 F 1.35106 * 120.34907 * 179.77130 * 14 13 12 16 16 C 1.38380 * 119.29425 * 359.75163 * 14 13 12 17 17 N 1.31955 * 120.81562 * 359.97173 * 16 14 13 18 18 O 1.41593 * 119.18675 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.47707 * 354.85207 * 1 2 3 20 20 H 1.09003 * 109.47183 * 114.85682 * 1 2 3 21 21 H 1.09007 * 109.46871 * 234.84821 * 1 2 3 22 22 H 0.96993 * 119.99878 * 355.17066 * 6 5 3 23 23 H 1.07995 * 120.44085 * 359.97438 * 12 11 2 24 24 H 1.07999 * 120.75292 * 180.26627 * 13 12 11 25 25 H 1.07996 * 119.59007 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1144 1.2518 0.4802 5 6 1.6028 2.3022 -0.6169 6 7 1.8060 3.4994 -0.1098 7 14 0.5728 2.1050 -2.1627 8 1 1.4512 2.1897 -3.3571 9 1 -0.1059 0.7843 -2.1402 10 1 -0.4458 3.1840 -2.2198 11 6 2.1604 -1.2043 -0.0005 12 6 3.5362 -1.2055 0.2067 13 6 4.2159 -2.4106 0.2091 14 6 3.4947 -3.5794 -0.0077 15 9 4.1213 -4.7763 -0.0178 16 6 2.1283 -3.5036 -0.2128 17 7 1.5069 -2.3396 -0.2039 18 8 0.1076 -2.3022 -0.4169 19 1 -0.3634 1.0234 0.0922 20 1 -0.3634 -0.4320 -0.9325 21 1 -0.3633 -0.5917 0.8403 22 1 2.2776 3.5958 0.7322 23 1 4.0661 -0.2783 0.3673 24 1 5.2831 -2.4425 0.3717 25 1 1.5633 -4.4085 -0.3813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:03 Heat of formation + Delta-G solvation = 39.793663 kcal Electronic energy + Delta-G solvation = -14021.717370 eV Core-core repulsion = 11340.003533 eV Total energy + Delta-G solvation = -2681.713837 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.27326 -40.27017 -36.52044 -33.54634 -32.74893 -29.58740 -28.94307 -26.53944 -24.45536 -23.21946 -21.60246 -18.53725 -17.49200 -16.98426 -16.43482 -15.51862 -14.85346 -14.49874 -14.41510 -14.25309 -13.83063 -13.40658 -12.80114 -12.59189 -12.19442 -11.71089 -10.98484 -10.88148 -10.42057 -10.27766 -10.01259 -9.44581 -8.94188 -8.12060 -7.86211 -7.54772 -6.97758 -4.32372 1.46039 1.54747 3.09839 3.16682 3.31498 3.37225 3.88582 3.92493 4.13683 4.52438 4.79596 5.17078 5.19344 5.55071 6.09290 6.21603 6.24600 6.51041 6.52786 6.80782 6.91828 7.11618 7.34658 7.59279 7.97556 8.13437 8.62504 8.94307 9.89318 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.046166 B = 0.010572 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.355276 B = 2647.959385 C = 2976.393208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.386 5.386 3 C -0.413 4.413 4 H 0.106 0.894 5 C 0.044 3.956 6 N -0.812 5.812 7 Si 1.020 2.980 8 H -0.277 1.277 9 H -0.251 1.251 10 H -0.274 1.274 11 C 0.313 3.687 12 C -0.187 4.187 13 C -0.056 4.056 14 C -0.066 4.066 15 F -0.142 7.142 16 C 0.116 3.884 17 N -0.182 5.182 18 O -0.601 6.601 19 H 0.052 0.948 20 H 0.090 0.910 21 H 0.063 0.937 22 H 0.287 0.713 23 H 0.155 0.845 24 H 0.140 0.860 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.004 -5.516 0.162 6.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.070 5.070 3 C -0.540 4.540 4 H 0.123 0.877 5 C -0.173 4.173 6 N -0.438 5.438 7 Si 0.843 3.157 8 H -0.203 1.203 9 H -0.175 1.175 10 H -0.199 1.199 11 C 0.079 3.921 12 C -0.213 4.213 13 C -0.082 4.082 14 C -0.094 4.094 15 F -0.121 7.121 16 C -0.035 4.035 17 N 0.119 4.881 18 O -0.647 6.647 19 H 0.070 0.930 20 H 0.108 0.892 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.173 0.827 24 H 0.158 0.842 25 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.512 -4.211 -1.013 5.007 hybrid contribution 0.920 -1.032 1.275 1.880 sum 3.432 -5.243 0.261 6.272 Atomic orbital electron populations 1.22460 0.78474 0.99409 1.04568 1.43171 1.05783 1.01547 1.56508 1.20704 1.07913 0.85311 1.40120 0.87676 1.26641 0.97908 0.90827 1.01967 1.70910 1.29850 1.24126 1.18878 0.84527 0.77421 0.78401 0.75383 1.20253 1.17519 1.19902 1.18436 0.89119 0.82302 1.02237 1.20587 0.90542 0.99039 1.11127 1.21224 1.00309 0.90504 0.96124 1.16792 0.89925 0.81641 1.21029 1.91411 1.81804 1.43124 1.95747 1.21721 0.91925 0.91238 0.98627 1.42238 1.11226 1.01231 1.33424 1.97423 0.79925 1.96966 1.90350 0.92983 0.89182 0.91820 0.90136 0.82735 0.84182 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.19 6.82 59.85 0.41 2.60 15 2 N -0.39 -9.27 2.77 -122.38 -0.34 -9.61 15 3 C -0.41 -9.95 9.05 -15.09 -0.14 -10.08 15 4 H 0.11 2.49 6.40 -52.49 -0.34 2.16 15 5 C 0.04 1.07 4.80 -17.45 -0.08 0.98 15 6 N -0.81 -20.31 13.70 55.49 0.76 -19.55 15 7 Si 1.02 22.11 27.03 -169.99 -4.60 17.52 15 8 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 9 H -0.25 -5.49 4.75 56.52 0.27 -5.23 15 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 11 C 0.31 7.09 7.29 -154.82 -1.13 5.96 15 12 C -0.19 -3.52 9.33 -39.20 -0.37 -3.89 15 13 C -0.06 -0.91 10.15 -39.24 -0.40 -1.31 15 14 C -0.07 -1.13 7.34 -39.23 -0.29 -1.41 15 15 F -0.14 -2.27 17.28 2.25 0.04 -2.23 15 16 C 0.12 2.23 10.67 -17.45 -0.19 2.04 15 17 N -0.18 -4.25 3.60 -12.30 -0.04 -4.29 15 18 O -0.60 -16.36 15.34 -11.47 -0.18 -16.54 15 19 H 0.05 1.16 5.86 -51.93 -0.30 0.85 15 20 H 0.09 2.25 5.07 -51.93 -0.26 1.99 15 21 H 0.06 1.52 7.35 -51.93 -0.38 1.13 15 22 H 0.29 6.95 8.73 -40.82 -0.36 6.59 15 23 H 0.16 2.76 6.19 -52.49 -0.32 2.43 15 24 H 0.14 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.17 2.83 8.06 -52.49 -0.42 2.41 15 LS Contribution 219.86 15.07 3.31 3.31 Total: -1.00 -28.78 219.86 -4.96 -33.74 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -1.74 Total: 2.76 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.18 Total: -5.11 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.38 Total: -33.46 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.18 Total: -16.54 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.60 Total: 17.52 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.78 -4.96 -33.74 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.532 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds