Wall clock time and date at job start Sun Mar 29 2020 21:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36874 * 119.99686 * 2 1 4 4 H 1.07998 * 120.00072 * 149.10917 * 3 2 1 5 5 C 1.38794 * 120.00173 * 329.12126 * 3 2 1 6 6 N 1.31592 * 120.00163 * 145.09562 * 5 3 2 7 7 Si 1.86802 * 119.99537 * 325.36504 * 5 3 2 8 8 H 1.48504 * 109.47383 * 269.72885 * 7 5 3 9 9 H 1.48504 * 109.47274 * 29.72835 * 7 5 3 10 10 H 1.48498 * 109.47213 * 149.72952 * 7 5 3 11 11 C 1.39062 * 120.00339 * 180.02562 * 2 1 3 12 12 C 1.39135 * 119.68018 * 189.87346 * 11 2 1 13 13 C 1.38362 * 119.12775 * 179.74924 * 12 11 2 14 14 C 1.39036 * 118.49716 * 0.51402 * 13 12 11 15 15 F 1.35106 * 120.34907 * 179.77130 * 14 13 12 16 16 C 1.38380 * 119.29425 * 359.75163 * 14 13 12 17 17 N 1.31955 * 120.81562 * 359.97173 * 16 14 13 18 18 O 1.41593 * 119.18675 * 180.02562 * 17 16 14 19 19 H 1.08995 * 109.47707 * 354.85207 * 1 2 3 20 20 H 1.09003 * 109.47183 * 114.85682 * 1 2 3 21 21 H 1.09007 * 109.46871 * 234.84821 * 1 2 3 22 22 H 0.96993 * 119.99878 * 355.17066 * 6 5 3 23 23 H 1.07995 * 120.44085 * 359.97438 * 12 11 2 24 24 H 1.07999 * 120.75292 * 180.26627 * 13 12 11 25 25 H 1.07996 * 119.59007 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1144 1.2518 0.4802 5 6 1.6028 2.3022 -0.6169 6 7 1.8060 3.4994 -0.1098 7 14 0.5728 2.1050 -2.1627 8 1 1.4512 2.1897 -3.3571 9 1 -0.1059 0.7843 -2.1402 10 1 -0.4458 3.1840 -2.2198 11 6 2.1604 -1.2043 -0.0005 12 6 3.5362 -1.2055 0.2067 13 6 4.2159 -2.4106 0.2091 14 6 3.4947 -3.5794 -0.0077 15 9 4.1213 -4.7763 -0.0178 16 6 2.1283 -3.5036 -0.2128 17 7 1.5069 -2.3396 -0.2039 18 8 0.1076 -2.3022 -0.4169 19 1 -0.3634 1.0234 0.0922 20 1 -0.3634 -0.4320 -0.9325 21 1 -0.3633 -0.5917 0.8403 22 1 2.2776 3.5958 0.7322 23 1 4.0661 -0.2783 0.3673 24 1 5.2831 -2.4425 0.3717 25 1 1.5633 -4.4085 -0.3813 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166798548.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:02 Heat of formation + Delta-G solvation = 22.325562 kcal Electronic energy + Delta-G solvation = -14022.474844 eV Core-core repulsion = 11340.003533 eV Total energy + Delta-G solvation = -2682.471311 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.070 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.73584 -41.96668 -38.22549 -35.20180 -34.49102 -31.25570 -30.76854 -28.32590 -26.16304 -24.82465 -23.27611 -20.28247 -19.06223 -18.62069 -18.05876 -17.17057 -16.45870 -16.16129 -15.96699 -15.89564 -15.52892 -14.95397 -14.49936 -14.19193 -13.92220 -13.43307 -12.74450 -12.42589 -12.10836 -11.98583 -11.64808 -11.14403 -10.69642 -9.91510 -9.80165 -9.34610 -8.77721 -6.15315 -0.10084 -0.02669 1.38440 1.42788 1.63844 1.67760 2.20090 2.25790 2.42324 2.76805 3.20118 3.66505 3.80186 3.97340 4.36060 4.61054 4.64052 4.80725 4.97420 4.99475 5.31613 5.41807 5.58256 5.89570 6.19874 6.34916 6.86638 7.22608 8.12686 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.046166 B = 0.010572 C = 0.009405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.355276 B = 2647.959385 C = 2976.393208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.421 5.421 3 C -0.422 4.422 4 H 0.102 0.898 5 C 0.018 3.982 6 N -0.846 5.846 7 Si 1.047 2.953 8 H -0.270 1.270 9 H -0.261 1.261 10 H -0.271 1.271 11 C 0.312 3.688 12 C -0.182 4.182 13 C -0.029 4.029 14 C -0.022 4.022 15 F -0.124 7.124 16 C 0.101 3.899 17 N -0.206 5.206 18 O -0.643 6.643 19 H 0.055 0.945 20 H 0.069 0.931 21 H 0.048 0.952 22 H 0.283 0.717 23 H 0.169 0.831 24 H 0.194 0.806 25 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -7.626 0.179 9.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.110 5.110 3 C -0.549 4.549 4 H 0.120 0.880 5 C -0.195 4.195 6 N -0.474 5.474 7 Si 0.869 3.131 8 H -0.196 1.196 9 H -0.186 1.186 10 H -0.195 1.195 11 C 0.080 3.920 12 C -0.207 4.207 13 C -0.054 4.054 14 C -0.049 4.049 15 F -0.103 7.103 16 C -0.047 4.047 17 N 0.093 4.907 18 O -0.689 6.689 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.186 0.814 24 H 0.212 0.788 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.927 -6.393 -1.004 8.133 hybrid contribution 0.457 -0.884 1.317 1.651 sum 5.384 -7.277 0.313 9.057 Atomic orbital electron populations 1.22144 0.79232 0.98971 1.02756 1.43062 1.05393 1.01880 1.60697 1.20566 1.08037 0.85588 1.40747 0.88033 1.27148 0.98538 0.90824 1.02945 1.70956 1.32343 1.24599 1.19504 0.84129 0.76905 0.77735 0.74321 1.19563 1.18571 1.19543 1.19147 0.90674 0.81956 1.00226 1.20930 0.88851 1.00985 1.09939 1.21764 1.02652 0.88445 0.92544 1.16891 0.88945 0.82542 1.16537 1.91493 1.81230 1.42324 1.95243 1.22198 0.93227 0.90941 0.98304 1.42375 1.10452 1.02516 1.35320 1.97406 0.82313 1.97314 1.91827 0.92612 0.91268 0.93323 0.90681 0.81391 0.78841 0.79647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.44 6.82 127.77 0.87 6.31 15 2 N -0.42 -20.38 2.77 -541.11 -1.50 -21.88 15 3 C -0.42 -20.55 9.05 84.04 0.76 -19.79 15 4 H 0.10 4.82 6.40 -2.91 -0.02 4.81 15 5 C 0.02 0.88 4.80 84.86 0.41 1.29 15 6 N -0.85 -43.35 13.70 21.65 0.30 -43.06 15 7 Si 1.05 45.80 27.03 68.60 1.85 47.65 15 8 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 9 H -0.26 -11.73 4.75 99.48 0.47 -11.26 15 10 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 11 C 0.31 13.74 7.29 132.99 0.97 14.71 15 12 C -0.18 -6.17 9.33 22.51 0.21 -5.96 15 13 C -0.03 -0.75 10.15 22.49 0.23 -0.52 15 14 C -0.02 -0.63 7.34 22.49 0.17 -0.46 15 15 F -0.12 -3.17 17.28 44.97 0.78 -2.40 15 16 C 0.10 3.54 10.67 84.71 0.90 4.45 15 17 N -0.21 -9.35 3.60 -192.84 -0.69 -10.04 15 18 O -0.64 -35.49 15.34 -38.77 -0.59 -36.09 15 19 H 0.06 2.59 5.86 -2.39 -0.01 2.58 15 20 H 0.07 3.60 5.07 -2.39 -0.01 3.59 15 21 H 0.05 2.42 7.35 -2.38 -0.02 2.40 15 22 H 0.28 14.11 8.73 -92.71 -0.81 13.30 15 23 H 0.17 5.41 6.19 -2.91 -0.02 5.39 15 24 H 0.19 3.17 8.06 -2.91 -0.02 3.15 15 25 H 0.19 5.73 8.06 -2.91 -0.02 5.70 15 Total: -1.00 -63.16 219.86 5.61 -57.55 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.95 Total: 8.24 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 4.52 Total: 0.03 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.90 Total: -74.98 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.59 Total: -36.09 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.85 Total: 47.65 kcal Total: -63.16 5.61 -57.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798548.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.874 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds