Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36915 * 120.00083 * 2 1 4 4 H 1.07995 * 120.00067 * 204.42473 * 3 2 1 5 5 C 1.38810 * 119.99706 * 24.41913 * 3 2 1 6 6 N 1.31565 * 120.00470 * 10.50233 * 5 3 2 7 7 Si 1.86804 * 119.99899 * 190.49655 * 5 3 2 8 8 H 1.48505 * 109.46965 * 84.93543 * 7 5 3 9 9 H 1.48504 * 109.47001 * 204.93294 * 7 5 3 10 10 H 1.48493 * 109.47062 * 324.93528 * 7 5 3 11 11 C 1.38848 * 120.00318 * 179.97438 * 2 1 3 12 12 C 1.39163 * 119.70573 * 185.00175 * 11 2 1 13 13 C 1.38461 * 119.07313 * 180.23088 * 12 11 2 14 14 Cl 1.73602 * 120.76278 * 179.72252 * 13 12 11 15 15 C 1.39032 * 118.47667 * 359.48832 * 13 12 11 16 16 C 1.38068 * 119.32011 * 0.53406 * 15 13 12 17 17 N 1.31907 * 120.88242 * 359.70806 * 16 15 13 18 18 H 1.08995 * 109.47364 * 274.50989 * 1 2 3 19 19 H 1.09000 * 109.47044 * 34.51357 * 1 2 3 20 20 H 1.08999 * 109.47042 * 154.51285 * 1 2 3 21 21 H 0.96996 * 120.00757 * 179.97438 * 6 5 3 22 22 H 1.07998 * 120.46610 * 359.95437 * 12 11 2 23 23 H 1.07997 * 120.33477 * 180.28134 * 15 13 12 24 24 H 1.08005 * 119.55668 * 179.72261 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1570 1.2276 -0.3867 5 6 1.5486 2.3340 0.4970 6 7 0.4114 2.2502 1.1532 7 14 2.3547 3.9986 0.2342 8 1 1.9597 4.5359 -1.0926 9 1 1.9140 4.9355 1.2988 10 1 3.8310 3.8476 0.2877 11 6 2.1593 -1.2024 0.0005 12 6 3.5469 -1.1975 0.1059 13 6 4.2264 -2.4038 0.1003 14 17 5.9576 -2.4484 0.2221 15 6 3.4902 -3.5789 -0.0002 16 6 2.1150 -3.5086 -0.1019 17 7 1.4946 -2.3445 -0.0990 18 1 -0.3634 0.0808 1.0244 19 1 -0.3633 0.8468 -0.5823 20 1 -0.3633 -0.9277 -0.4422 21 1 -0.0084 3.0525 1.5008 22 1 4.0866 -0.2655 0.1865 23 1 3.9891 -4.5367 -0.0029 24 1 1.5396 -4.4188 -0.1847 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800931.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 26.888294 kcal Electronic energy + Delta-G solvation = -11718.394707 eV Core-core repulsion = 9464.457627 eV Total energy + Delta-G solvation = -2253.937081 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.87008 -37.95828 -37.29731 -33.94455 -32.71680 -30.76702 -28.45151 -25.99296 -24.01302 -22.61090 -19.50747 -18.46704 -17.12125 -16.76287 -16.12966 -15.65017 -15.46720 -14.87939 -14.34097 -14.25172 -13.43875 -13.05973 -12.98792 -12.85958 -12.64402 -12.37519 -12.11979 -11.81931 -11.30228 -10.58038 -10.20273 -10.15271 -8.77062 -8.32967 -5.89933 0.48999 0.64111 1.14408 1.41435 1.45998 1.53419 2.20083 2.83358 2.94118 3.28991 3.91553 4.41193 4.44806 4.58406 4.78654 4.96507 5.00320 5.15634 5.30684 5.31783 5.43116 5.72343 6.08023 6.55889 7.14765 7.27371 7.80042 8.63432 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.034841 B = 0.010288 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.454471 B = 2720.912972 C = 3455.193208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.444 5.444 3 C -0.335 4.335 4 H 0.097 0.903 5 C -0.009 4.009 6 N -0.898 5.898 7 Si 0.998 3.002 8 H -0.269 1.269 9 H -0.279 1.279 10 H -0.262 1.262 11 C 0.359 3.641 12 C -0.267 4.267 13 C 0.055 3.945 14 Cl -0.066 7.066 15 C -0.281 4.281 16 C 0.167 3.833 17 N -0.588 5.588 18 H 0.037 0.963 19 H 0.045 0.955 20 H 0.056 0.944 21 H 0.273 0.727 22 H 0.121 0.879 23 H 0.157 0.843 24 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -6.184 -2.016 8.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.135 5.135 3 C -0.463 4.463 4 H 0.114 0.886 5 C -0.212 4.212 6 N -0.534 5.534 7 Si 0.820 3.180 8 H -0.194 1.194 9 H -0.204 1.204 10 H -0.186 1.186 11 C 0.119 3.881 12 C -0.295 4.295 13 C 0.021 3.979 14 Cl -0.038 7.038 15 C -0.308 4.308 16 C 0.005 3.995 17 N -0.309 5.309 18 H 0.056 0.944 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.139 0.861 23 H 0.174 0.826 24 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 3.959 -5.658 -1.962 7.179 hybrid contribution 1.155 0.977 0.170 1.522 sum 5.113 -4.681 -1.792 7.160 Atomic orbital electron populations 1.21128 0.79576 0.98859 1.00314 1.42634 1.05371 1.01604 1.63878 1.19861 1.01300 0.84892 1.40274 0.88556 1.26291 0.97067 1.03485 0.94311 1.70188 1.18585 1.30897 1.33746 0.84867 0.78752 0.76215 0.78142 1.19416 1.20376 1.18602 1.18623 0.88440 0.86587 0.94454 1.21002 0.93593 0.97969 1.16975 1.21009 0.84303 0.94675 0.97898 1.98318 1.10305 1.98868 1.96264 1.21606 0.94992 0.97524 1.16635 1.22843 0.91638 0.94794 0.90247 1.67171 1.41093 0.98004 1.24647 0.94420 0.93647 0.92521 0.91690 0.86089 0.82583 0.79385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.19 8.79 127.77 1.12 8.32 14 2 N -0.44 -23.26 3.12 -541.30 -1.69 -24.95 14 3 C -0.34 -17.71 8.89 84.04 0.75 -16.96 14 4 H 0.10 4.94 6.35 -2.91 -0.02 4.92 14 5 C -0.01 -0.46 5.14 84.87 0.44 -0.02 14 6 N -0.90 -47.96 10.66 21.65 0.23 -47.73 14 7 Si 1.00 40.29 29.57 68.60 2.03 42.32 14 8 H -0.27 -10.53 7.11 99.48 0.71 -9.83 14 9 H -0.28 -11.03 7.11 99.48 0.71 -10.32 14 10 H -0.26 -10.22 7.11 99.48 0.71 -9.51 14 11 C 0.36 17.32 7.34 133.09 0.98 18.30 14 12 C -0.27 -11.91 9.09 22.55 0.20 -11.70 14 13 C 0.06 2.06 6.37 22.51 0.14 2.20 14 14 Cl -0.07 -2.08 29.02 -2.72 -0.08 -2.16 14 15 C -0.28 -9.15 9.93 22.42 0.22 -8.93 14 16 C 0.17 5.69 11.17 84.64 0.95 6.63 14 17 N -0.59 -25.56 9.01 -193.29 -1.74 -27.30 14 18 H 0.04 1.98 7.35 -2.39 -0.02 1.96 14 19 H 0.04 2.29 7.33 -2.39 -0.02 2.27 14 20 H 0.06 2.59 7.16 -2.39 -0.02 2.58 14 21 H 0.27 13.72 8.31 -92.71 -0.77 12.95 14 22 H 0.12 5.58 6.29 -2.91 -0.02 5.56 14 23 H 0.16 3.95 8.06 -2.91 -0.02 3.92 14 24 H 0.19 4.62 8.06 -2.91 -0.02 4.60 14 Total: -1.00 -57.65 228.32 4.77 -52.89 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 1.21 Total: 9.10 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.80 Total: -2.17 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -3.20 Total: -99.98 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.08 Total: -2.16 kcal Total: -57.65 4.77 -52.89 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800931.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.776 kcal (2) G-P(sol) polarization free energy of solvation -57.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds