Wall clock time and date at job start Sun Mar 29 2020 21:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36916 * 120.00534 * 2 1 4 4 H 1.07999 * 119.99667 * 154.30743 * 3 2 1 5 5 C 1.38810 * 119.99580 * 334.03121 * 3 2 1 6 6 N 1.31571 * 120.00413 * 349.37342 * 5 3 2 7 7 Si 1.86805 * 119.99735 * 169.37010 * 5 3 2 8 8 H 1.48498 * 109.47015 * 90.00462 * 7 5 3 9 9 H 1.48498 * 109.46773 * 210.00345 * 7 5 3 10 10 H 1.48497 * 109.46963 * 330.00065 * 7 5 3 11 11 C 1.38841 * 119.99737 * 179.97438 * 2 1 3 12 12 C 1.39188 * 119.70364 * 185.00052 * 11 2 1 13 13 C 1.38347 * 119.12054 * 179.97438 * 12 11 2 14 14 C 1.38819 * 118.52513 * 0.02562 * 13 12 11 15 15 C 1.38306 * 119.32145 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 119.58032 * 180.02562 * 15 14 13 17 17 N 1.31985 * 120.83440 * 359.75159 * 15 14 13 18 18 H 1.09005 * 109.47032 * 91.11543 * 1 2 3 19 19 H 1.08990 * 109.47582 * 211.11803 * 1 2 3 20 20 H 1.09005 * 109.47107 * 331.12262 * 1 2 3 21 21 H 0.96996 * 119.99819 * 179.97438 * 6 5 3 22 22 H 1.08004 * 120.44153 * 359.95811 * 12 11 2 23 23 H 1.08000 * 120.74033 * 180.02562 * 13 12 11 24 24 H 1.07999 * 120.34086 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1496 1.2317 0.4055 5 6 1.5607 2.3271 -0.5264 6 7 0.4404 2.2339 -1.2100 7 14 2.3589 3.9956 -0.2642 8 1 3.3044 4.2721 -1.3754 9 1 1.3102 5.0465 -0.2336 10 1 3.0963 3.9944 1.0247 11 6 2.1591 -1.2024 0.0005 12 6 3.5470 -1.1975 0.1059 13 6 4.2264 -2.4027 0.1058 14 6 3.4936 -3.5769 -0.0006 15 6 2.1160 -3.5086 -0.1021 16 17 1.1928 -4.9728 -0.2348 17 7 1.4939 -2.3446 -0.0939 18 1 -0.3633 -0.0200 -1.0275 19 1 -0.3634 -0.8797 0.5310 20 1 -0.3633 0.8999 0.4963 21 1 0.0288 3.0317 -1.5775 22 1 4.0864 -0.2653 0.1865 23 1 5.3031 -2.4294 0.1866 24 1 3.9941 -4.5339 -0.0041 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800950.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:38 Heat of formation + Delta-G solvation = 41.396505 kcal Electronic energy + Delta-G solvation = -11713.394167 eV Core-core repulsion = 9460.086209 eV Total energy + Delta-G solvation = -2253.307957 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19350 -36.34105 -35.53452 -32.19050 -31.33216 -28.91618 -26.58077 -24.23155 -22.25397 -21.00372 -17.74307 -16.63618 -15.53159 -15.00163 -14.60704 -13.97517 -13.90259 -13.24016 -12.65688 -12.37252 -11.68389 -11.29628 -11.19374 -10.97355 -10.86220 -10.67381 -10.51238 -10.39517 -9.48585 -9.02827 -8.56960 -8.53079 -6.95607 -6.51168 -4.00314 2.09048 2.33252 2.55933 3.06373 3.09845 3.13444 3.90041 4.57277 4.69448 5.02325 5.54368 6.02168 6.11971 6.17754 6.42714 6.63180 6.86740 6.89094 7.11530 7.23774 7.28173 7.42914 7.83020 8.31706 8.78342 9.07920 9.55490 10.45674 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.055890 B = 0.008616 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.861920 B = 3249.116861 C = 3685.715095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.413 5.413 3 C -0.315 4.315 4 H 0.100 0.900 5 C 0.034 3.966 6 N -0.863 5.863 7 Si 0.933 3.067 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.267 1.267 11 C 0.380 3.620 12 C -0.248 4.248 13 C -0.027 4.027 14 C -0.287 4.287 15 C 0.242 3.758 16 Cl -0.075 7.075 17 N -0.568 5.568 18 H 0.054 0.946 19 H 0.039 0.961 20 H 0.064 0.936 21 H 0.273 0.727 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.552 -4.713 2.066 6.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.101 5.101 3 C -0.443 4.443 4 H 0.118 0.882 5 C -0.173 4.173 6 N -0.497 5.497 7 Si 0.758 3.242 8 H -0.200 1.200 9 H -0.205 1.205 10 H -0.191 1.191 11 C 0.138 3.862 12 C -0.275 4.275 13 C -0.052 4.052 14 C -0.315 4.315 15 C 0.073 3.927 16 Cl -0.047 7.047 17 N -0.291 5.291 18 H 0.072 0.928 19 H 0.058 0.942 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.147 0.853 23 H 0.140 0.860 24 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.205 -4.266 1.885 5.159 hybrid contribution 0.976 0.671 0.000 1.185 sum 3.181 -3.596 1.885 5.158 Atomic orbital electron populations 1.21357 0.79594 0.99223 1.01375 1.42575 1.05216 1.01062 1.61215 1.19656 1.01783 0.84301 1.38583 0.88213 1.25488 0.96617 1.00525 0.94669 1.70092 1.18221 1.30443 1.30989 0.85828 0.78789 0.80411 0.79149 1.19972 1.20482 1.19141 1.18197 0.88095 0.85086 0.94793 1.21225 0.93590 0.98683 1.14034 1.20955 0.98733 0.91498 0.94005 1.20834 0.91962 0.98963 1.19774 1.20927 0.87875 0.86774 0.97171 1.98323 1.76516 1.33499 1.96315 1.66193 1.40891 0.96628 1.25431 0.92771 0.94224 0.91749 0.91677 0.85279 0.86011 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.13 8.66 59.84 0.52 3.65 14 2 N -0.41 -10.57 3.11 -122.44 -0.38 -10.95 14 3 C -0.31 -7.99 9.02 -15.07 -0.14 -8.13 14 4 H 0.10 2.39 6.09 -52.49 -0.32 2.07 14 5 C 0.03 0.83 5.10 -17.45 -0.09 0.74 14 6 N -0.86 -22.40 10.80 55.49 0.60 -21.80 14 7 Si 0.93 19.05 29.57 -169.99 -5.03 14.02 14 8 H -0.27 -5.58 7.11 56.52 0.40 -5.18 14 9 H -0.28 -5.68 7.11 56.52 0.40 -5.28 14 10 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 11 C 0.38 9.21 7.33 -155.06 -1.14 8.08 14 12 C -0.25 -5.33 9.31 -39.19 -0.36 -5.69 14 13 C -0.03 -0.49 10.16 -39.33 -0.40 -0.89 14 14 C -0.29 -5.34 9.87 -39.34 -0.39 -5.73 14 15 C 0.24 5.03 7.27 -17.46 -0.13 4.90 14 16 Cl -0.07 -1.32 29.10 -51.86 -1.51 -2.83 14 17 N -0.57 -13.42 9.16 -9.54 -0.09 -13.50 14 18 H 0.05 1.39 7.64 -51.93 -0.40 1.00 14 19 H 0.04 0.92 7.48 -51.93 -0.39 0.53 14 20 H 0.06 1.58 7.06 -51.93 -0.37 1.21 14 21 H 0.27 6.66 8.31 -40.82 -0.34 6.32 14 22 H 0.13 2.67 6.13 -52.48 -0.32 2.35 14 23 H 0.12 1.78 8.06 -52.49 -0.42 1.36 14 24 H 0.12 1.87 8.06 -52.49 -0.42 1.45 14 LS Contribution 228.61 15.07 3.45 3.45 Total: -1.00 -26.93 228.61 -6.86 -33.79 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: -1.77 Total: 0.90 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.12 Total: -3.07 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.13 Total: -46.26 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.51 Total: -2.83 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -26.93 -6.86 -33.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800950.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.182 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds