Wall clock time and date at job start Sun Mar 29 2020 21:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36916 * 120.00534 * 2 1 4 4 H 1.07999 * 119.99667 * 154.30743 * 3 2 1 5 5 C 1.38810 * 119.99580 * 334.03121 * 3 2 1 6 6 N 1.31571 * 120.00413 * 349.37342 * 5 3 2 7 7 Si 1.86805 * 119.99735 * 169.37010 * 5 3 2 8 8 H 1.48498 * 109.47015 * 90.00462 * 7 5 3 9 9 H 1.48498 * 109.46773 * 210.00345 * 7 5 3 10 10 H 1.48497 * 109.46963 * 330.00065 * 7 5 3 11 11 C 1.38841 * 119.99737 * 179.97438 * 2 1 3 12 12 C 1.39188 * 119.70364 * 185.00052 * 11 2 1 13 13 C 1.38347 * 119.12054 * 179.97438 * 12 11 2 14 14 C 1.38819 * 118.52513 * 0.02562 * 13 12 11 15 15 C 1.38306 * 119.32145 * 359.97438 * 14 13 12 16 16 Cl 1.73602 * 119.58032 * 180.02562 * 15 14 13 17 17 N 1.31985 * 120.83440 * 359.75159 * 15 14 13 18 18 H 1.09005 * 109.47032 * 91.11543 * 1 2 3 19 19 H 1.08990 * 109.47582 * 211.11803 * 1 2 3 20 20 H 1.09005 * 109.47107 * 331.12262 * 1 2 3 21 21 H 0.96996 * 119.99819 * 179.97438 * 6 5 3 22 22 H 1.08004 * 120.44153 * 359.95811 * 12 11 2 23 23 H 1.08000 * 120.74033 * 180.02562 * 13 12 11 24 24 H 1.07999 * 120.34086 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1857 0.0000 4 1 3.1496 1.2317 0.4055 5 6 1.5607 2.3271 -0.5264 6 7 0.4404 2.2339 -1.2100 7 14 2.3589 3.9956 -0.2642 8 1 3.3044 4.2721 -1.3754 9 1 1.3102 5.0465 -0.2336 10 1 3.0963 3.9944 1.0247 11 6 2.1591 -1.2024 0.0005 12 6 3.5470 -1.1975 0.1059 13 6 4.2264 -2.4027 0.1058 14 6 3.4936 -3.5769 -0.0006 15 6 2.1160 -3.5086 -0.1021 16 17 1.1928 -4.9728 -0.2348 17 7 1.4939 -2.3446 -0.0939 18 1 -0.3633 -0.0200 -1.0275 19 1 -0.3634 -0.8797 0.5310 20 1 -0.3633 0.8999 0.4963 21 1 0.0288 3.0317 -1.5775 22 1 4.0864 -0.2653 0.1865 23 1 5.3031 -2.4294 0.1866 24 1 3.9941 -4.5339 -0.0041 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800950.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:38 Heat of formation + Delta-G solvation = 26.654569 kcal Electronic energy + Delta-G solvation = -11714.033425 eV Core-core repulsion = 9460.086209 eV Total energy + Delta-G solvation = -2253.947216 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.89111 -38.00406 -37.14215 -33.96383 -33.01150 -30.63030 -28.43450 -26.01951 -23.90696 -22.72407 -19.49441 -18.39409 -17.21615 -16.71549 -16.21301 -15.72986 -15.56773 -14.96955 -14.41061 -13.91410 -13.40465 -13.01930 -12.84119 -12.66579 -12.56112 -12.21113 -12.15261 -12.03834 -11.23856 -10.69967 -10.29291 -10.22002 -8.72742 -8.31583 -5.89972 0.45060 0.72669 1.00161 1.44231 1.47833 1.57455 2.22697 2.83463 2.94677 3.25216 4.02419 4.44842 4.50970 4.57274 4.75470 4.87310 4.92831 5.25019 5.28420 5.34629 5.58090 5.79917 6.07526 6.52205 7.02426 7.27518 7.77538 8.66559 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.055890 B = 0.008616 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.861920 B = 3249.116861 C = 3685.715095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.447 5.447 3 C -0.334 4.334 4 H 0.107 0.893 5 C -0.014 4.014 6 N -0.903 5.903 7 Si 1.002 2.998 8 H -0.271 1.271 9 H -0.280 1.280 10 H -0.257 1.257 11 C 0.362 3.638 12 C -0.263 4.263 13 C -0.012 4.012 14 C -0.265 4.265 15 C 0.217 3.783 16 Cl -0.051 7.051 17 N -0.596 5.596 18 H 0.028 0.972 19 H 0.042 0.958 20 H 0.052 0.948 21 H 0.272 0.728 22 H 0.133 0.867 23 H 0.171 0.829 24 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.754 -5.860 2.527 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.139 5.139 3 C -0.462 4.462 4 H 0.124 0.876 5 C -0.216 4.216 6 N -0.540 5.540 7 Si 0.825 3.175 8 H -0.197 1.197 9 H -0.206 1.206 10 H -0.181 1.181 11 C 0.123 3.877 12 C -0.290 4.290 13 C -0.037 4.037 14 C -0.291 4.291 15 C 0.049 3.951 16 Cl -0.023 7.023 17 N -0.320 5.320 18 H 0.047 0.953 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.150 0.850 23 H 0.188 0.812 24 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.439 -5.492 2.355 7.444 hybrid contribution 0.393 0.674 -0.134 0.791 sum 4.831 -4.818 2.221 7.176 Atomic orbital electron populations 1.21000 0.80218 0.98604 0.99520 1.42657 1.05074 1.01704 1.64445 1.19967 1.02311 0.84864 1.39092 0.87580 1.26393 0.97132 1.03837 0.94208 1.70214 1.19884 1.31148 1.32713 0.84790 0.77717 0.75767 0.79271 1.19654 1.20560 1.18126 1.18651 0.89409 0.85027 0.94595 1.21459 0.92644 1.00399 1.14525 1.21509 1.01070 0.89913 0.91245 1.21395 0.91116 1.00826 1.15806 1.21460 0.89369 0.86853 0.97401 1.98328 1.76264 1.31501 1.96174 1.66184 1.42141 0.97487 1.26178 0.95316 0.93934 0.92879 0.91820 0.84961 0.81163 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.71 8.66 127.77 1.11 8.82 14 2 N -0.45 -23.45 3.11 -541.28 -1.68 -25.13 14 3 C -0.33 -17.28 9.02 84.04 0.76 -16.52 14 4 H 0.11 5.12 6.09 -2.91 -0.02 5.10 14 5 C -0.01 -0.69 5.10 84.87 0.43 -0.26 14 6 N -0.90 -48.61 10.80 21.65 0.23 -48.38 14 7 Si 1.00 39.42 29.57 68.60 2.03 41.44 14 8 H -0.27 -10.41 7.11 99.48 0.71 -9.71 14 9 H -0.28 -10.91 7.11 99.48 0.71 -10.20 14 10 H -0.26 -9.58 7.11 99.48 0.71 -8.87 14 11 C 0.36 17.55 7.33 133.10 0.98 18.53 14 12 C -0.26 -10.84 9.31 22.52 0.21 -10.63 14 13 C -0.01 -0.40 10.16 22.44 0.23 -0.17 14 14 C -0.26 -8.71 9.87 22.43 0.22 -8.48 14 15 C 0.22 8.51 7.27 84.69 0.62 9.12 14 16 Cl -0.05 -1.68 29.10 -2.72 -0.08 -1.76 14 17 N -0.60 -27.85 9.16 -184.10 -1.69 -29.54 14 18 H 0.03 1.56 7.64 -2.38 -0.02 1.54 14 19 H 0.04 2.06 7.48 -2.39 -0.02 2.04 14 20 H 0.05 2.74 7.06 -2.38 -0.02 2.73 14 21 H 0.27 13.78 8.31 -92.71 -0.77 13.01 14 22 H 0.13 5.30 6.13 -2.91 -0.02 5.28 14 23 H 0.17 3.90 8.06 -2.91 -0.02 3.88 14 24 H 0.16 4.00 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -58.79 228.61 4.58 -54.21 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.21 Total: 8.76 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.55 Total: 0.39 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.13 Total: -103.05 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.76 kcal Total: -58.79 4.58 -54.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800950.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.868 kcal (2) G-P(sol) polarization free energy of solvation -58.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds