Wall clock time and date at job start Sun Mar 29 2020 21:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47384 * 2 1 4 4 C 1.53000 * 109.47198 * 120.00200 * 2 1 3 5 5 C 1.53000 * 109.46938 * 184.99955 * 4 2 1 6 6 C 1.50702 * 109.46761 * 180.02562 * 5 4 2 7 7 H 1.07989 * 120.00252 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00049 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99473 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00355 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46661 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47153 * 119.99912 * 10 8 6 13 13 H 1.48503 * 109.46993 * 240.00268 * 10 8 6 14 14 N 1.46901 * 109.47249 * 240.00279 * 2 1 3 15 15 C 1.46906 * 110.99864 * 85.00076 * 14 2 1 16 16 C 1.54270 * 110.48470 * 205.00182 * 15 14 2 17 17 C 1.53869 * 106.63967 * 217.73508 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.54895 * 104.19476 * 23.60777 * 18 17 16 20 20 H 1.09006 * 109.47079 * 59.99751 * 1 2 3 21 21 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47265 * 299.99769 * 1 2 3 23 23 H 1.08997 * 109.46921 * 304.99716 * 4 2 1 24 24 H 1.09000 * 109.46723 * 65.00423 * 4 2 1 25 25 H 1.08995 * 109.47766 * 300.00000 * 5 4 2 26 26 H 1.09000 * 109.47194 * 60.00126 * 5 4 2 27 27 H 0.97006 * 119.99447 * 180.02562 * 9 8 6 28 28 H 1.00892 * 111.00117 * 321.04854 * 14 2 1 29 29 H 1.08997 * 110.53846 * 327.61206 * 15 14 2 30 30 H 1.09002 * 110.03399 * 98.42506 * 16 15 14 31 31 H 1.08995 * 110.02943 * 337.04406 * 16 15 14 32 32 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 33 33 H 1.08996 * 110.03529 * 240.68999 * 17 16 15 34 34 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 35 35 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 36 36 H 1.09001 * 110.75082 * 80.37254 * 19 18 17 37 37 H 1.08991 * 110.75596 * 203.55944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2124 8 6 5.4184 -1.3606 2.8155 9 7 6.2688 -0.7742 2.0014 10 14 6.0413 -2.2425 4.3399 11 1 4.8913 -2.8147 5.0851 12 1 6.9640 -3.3343 3.9378 13 1 6.7635 -1.2788 5.2088 14 7 2.0196 -0.6924 -1.1995 15 6 2.0825 0.2228 -2.3469 16 6 1.9780 -0.5629 -3.6705 17 6 2.9288 0.1237 -4.6665 18 6 3.5781 1.3037 -3.9143 19 6 3.4707 0.9073 -2.4208 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.6054 -0.2618 2.1369 24 1 1.7516 -1.7716 1.2054 25 1 3.9995 -1.0727 0.4259 26 1 3.8531 0.4370 1.3573 27 1 7.2195 -0.8001 2.1924 28 1 1.4496 -1.4978 -1.4101 29 1 1.2917 0.9702 -2.2836 30 1 0.9553 -0.5279 -4.0458 31 1 2.2834 -1.5976 -3.5155 32 1 3.6961 -0.5776 -4.9944 33 1 2.3676 0.4919 -5.5253 34 1 4.6227 1.4134 -4.2057 35 1 3.0305 2.2263 -4.1065 36 1 4.2608 0.2072 -2.1493 37 1 3.5036 1.7907 -1.7833 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172475844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:50 Heat of formation + Delta-G solvation = -34.495334 kcal Electronic energy + Delta-G solvation = -14358.542191 eV Core-core repulsion = 12134.159346 eV Total energy + Delta-G solvation = -2224.382845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.47364 -35.85732 -32.97430 -30.85056 -28.93841 -28.46921 -26.01497 -24.87219 -21.37249 -20.43880 -19.85872 -19.39808 -16.10897 -15.92339 -15.31885 -14.44398 -14.24170 -14.02174 -13.24949 -13.07924 -12.72109 -12.36861 -12.24540 -11.64330 -11.18993 -11.13347 -11.04625 -10.84619 -10.82140 -10.65897 -10.47107 -10.37529 -10.30298 -10.04942 -9.56814 -9.15186 -8.83093 -8.19171 -7.77758 -5.84615 -3.85319 3.38631 3.45763 3.50037 4.54879 4.57448 4.76418 4.89207 5.12047 5.41584 5.50805 5.53600 5.61570 5.67508 5.72068 5.75325 5.83076 5.91880 6.04998 6.09638 6.15029 6.22960 6.32023 6.36713 6.50232 6.52023 6.74074 6.80707 6.95992 7.38484 7.66606 7.89729 7.93334 8.13715 8.29173 8.62658 9.24098 9.76971 11.26393 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033792 B = 0.007185 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.400916 B = 3896.069393 C = 4476.566213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.083 3.917 3 H 0.070 0.930 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.665 5.665 15 C 0.083 3.917 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.112 4.112 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.006 0.994 27 H 0.257 0.743 28 H 0.333 0.667 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 2.667 -10.983 14.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.026 4.026 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.555 4.555 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.295 5.295 15 C -0.027 4.027 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.164 4.164 19 C -0.150 4.150 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.025 0.975 27 H 0.066 0.934 28 H 0.152 0.848 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.318 2.772 -10.838 13.940 hybrid contribution -0.551 -0.352 0.661 0.930 sum -8.869 2.419 -10.176 13.714 Atomic orbital electron populations 1.22543 0.98814 1.01420 1.01110 1.21762 0.90714 0.98353 0.91793 0.91134 1.21622 1.00640 0.98297 0.93060 1.18988 0.88292 0.96428 0.96971 1.21407 0.91846 1.33806 1.08486 0.93121 1.25001 0.97158 0.95832 0.96491 1.69998 1.02048 1.44467 1.36909 0.86637 0.78802 0.79540 0.83589 1.19912 1.21154 1.21212 1.60623 1.57337 1.08706 1.02814 1.22373 0.96872 0.93927 0.89511 1.22320 0.98848 1.00369 0.94985 1.22038 0.98453 0.97642 0.97587 1.22347 1.00350 0.97487 0.96189 1.22533 0.97701 1.00301 0.94472 0.93862 0.92854 0.92377 0.93693 0.93573 0.94874 0.97535 0.93373 0.84847 0.94037 0.92606 0.90886 0.91857 0.92500 0.91795 0.92310 0.89772 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 9.15 37.15 0.34 -2.19 16 2 C 0.08 1.45 2.45 -67.71 -0.17 1.29 16 3 H 0.07 1.30 7.86 -51.92 -0.41 0.89 16 4 C -0.10 -2.09 4.83 -26.73 -0.13 -2.22 16 5 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 6 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.65 5.46 -17.81 -0.10 1.55 16 9 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 N -0.66 -11.05 5.53 -97.96 -0.54 -11.59 16 15 C 0.08 1.21 2.94 -66.01 -0.19 1.01 16 16 C -0.13 -1.56 6.27 -25.61 -0.16 -1.72 16 17 C -0.12 -1.36 6.80 -25.62 -0.17 -1.54 16 18 C -0.13 -1.56 6.83 -25.07 -0.17 -1.74 16 19 C -0.11 -1.74 6.58 -24.70 -0.16 -1.91 16 20 H 0.04 0.55 7.50 -51.93 -0.39 0.16 16 21 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.03 0.95 7.75 -51.93 -0.40 0.55 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.33 5.04 8.07 -39.30 -0.32 4.72 16 29 H 0.04 0.59 7.21 -51.93 -0.37 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -30.57 295.02 -8.66 -39.23 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.92 Total: -0.14 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.36 Total: -22.29 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.19 Total: -38.54 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.57 -8.66 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.733 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds