Wall clock time and date at job start Sun Mar 29 2020 21:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.47384 * 2 1 4 4 C 1.53000 * 109.47198 * 120.00200 * 2 1 3 5 5 C 1.53000 * 109.46938 * 184.99955 * 4 2 1 6 6 C 1.50702 * 109.46761 * 180.02562 * 5 4 2 7 7 H 1.07989 * 120.00252 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00049 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99473 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00355 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.46661 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47153 * 119.99912 * 10 8 6 13 13 H 1.48503 * 109.46993 * 240.00268 * 10 8 6 14 14 N 1.46901 * 109.47249 * 240.00279 * 2 1 3 15 15 C 1.46906 * 110.99864 * 85.00076 * 14 2 1 16 16 C 1.54270 * 110.48470 * 205.00182 * 15 14 2 17 17 C 1.53869 * 106.63967 * 217.73508 * 16 15 14 18 18 C 1.54268 * 106.60115 * 359.97438 * 17 16 15 19 19 C 1.54895 * 104.19476 * 23.60777 * 18 17 16 20 20 H 1.09006 * 109.47079 * 59.99751 * 1 2 3 21 21 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47265 * 299.99769 * 1 2 3 23 23 H 1.08997 * 109.46921 * 304.99716 * 4 2 1 24 24 H 1.09000 * 109.46723 * 65.00423 * 4 2 1 25 25 H 1.08995 * 109.47766 * 300.00000 * 5 4 2 26 26 H 1.09000 * 109.47194 * 60.00126 * 5 4 2 27 27 H 0.97006 * 119.99447 * 180.02562 * 9 8 6 28 28 H 1.00892 * 111.00117 * 321.04854 * 14 2 1 29 29 H 1.08997 * 110.53846 * 327.61206 * 15 14 2 30 30 H 1.09002 * 110.03399 * 98.42506 * 16 15 14 31 31 H 1.08995 * 110.02943 * 337.04406 * 16 15 14 32 32 H 1.08999 * 110.03405 * 119.26051 * 17 16 15 33 33 H 1.08996 * 110.03529 * 240.68999 * 17 16 15 34 34 H 1.08997 * 110.48788 * 142.28685 * 18 17 16 35 35 H 1.09000 * 110.48806 * 264.79985 * 18 17 16 36 36 H 1.09001 * 110.75082 * 80.37254 * 19 18 17 37 37 H 1.08991 * 110.75596 * 203.55944 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3243 2.5437 7 1 3.3689 -1.8054 3.2124 8 6 5.4184 -1.3606 2.8155 9 7 6.2688 -0.7742 2.0014 10 14 6.0413 -2.2425 4.3399 11 1 4.8913 -2.8147 5.0851 12 1 6.9640 -3.3343 3.9378 13 1 6.7635 -1.2788 5.2088 14 7 2.0196 -0.6924 -1.1995 15 6 2.0825 0.2228 -2.3469 16 6 1.9780 -0.5629 -3.6705 17 6 2.9288 0.1237 -4.6665 18 6 3.5781 1.3037 -3.9143 19 6 3.4707 0.9073 -2.4208 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.6054 -0.2618 2.1369 24 1 1.7516 -1.7716 1.2054 25 1 3.9995 -1.0727 0.4259 26 1 3.8531 0.4370 1.3573 27 1 7.2195 -0.8001 2.1924 28 1 1.4496 -1.4978 -1.4101 29 1 1.2917 0.9702 -2.2836 30 1 0.9553 -0.5279 -4.0458 31 1 2.2834 -1.5976 -3.5155 32 1 3.6961 -0.5776 -4.9944 33 1 2.3676 0.4919 -5.5253 34 1 4.6227 1.4134 -4.2057 35 1 3.0305 2.2263 -4.1065 36 1 4.2608 0.2072 -2.1493 37 1 3.5036 1.7907 -1.7833 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172475844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:49 Heat of formation + Delta-G solvation = -52.966790 kcal Electronic energy + Delta-G solvation = -14359.343173 eV Core-core repulsion = 12134.159346 eV Total energy + Delta-G solvation = -2225.183827 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.67792 -37.24577 -35.08336 -32.54703 -30.50265 -29.55082 -27.24734 -26.78917 -23.22612 -21.74107 -21.07020 -20.74268 -18.36364 -17.16392 -16.58592 -16.37205 -15.65466 -15.20988 -14.68739 -14.48076 -14.18303 -14.02751 -13.64106 -13.13269 -13.11770 -12.86464 -12.43799 -12.28220 -12.08707 -11.92785 -11.87310 -11.70900 -11.59078 -11.47758 -11.27813 -11.19236 -10.91296 -10.48654 -9.07965 -8.13275 -6.23954 1.39474 1.40274 1.53442 2.43826 3.18620 3.31599 3.69462 3.84683 4.06387 4.14657 4.32502 4.47505 4.49282 4.60322 4.67247 4.77971 4.78291 4.84731 4.96389 5.00763 5.05777 5.10884 5.12443 5.23572 5.29303 5.34527 5.38901 5.49728 5.53536 5.60103 5.90880 6.04361 6.35001 6.39336 6.72075 6.96228 7.44079 8.98085 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033792 B = 0.007185 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.400916 B = 3896.069393 C = 4476.566213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 H 0.054 0.946 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.055 0.945 8 C -0.003 4.003 9 N -0.932 5.932 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.686 5.686 15 C 0.085 3.915 16 C -0.121 4.121 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.119 4.119 20 H 0.062 0.938 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.003 0.997 26 H -0.027 1.027 27 H 0.260 0.740 28 H 0.343 0.657 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 2.216 -11.373 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.073 0.927 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.204 1.204 14 N -0.318 5.318 15 C -0.025 4.025 16 C -0.159 4.159 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.157 4.157 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.022 0.978 26 H -0.008 1.008 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.876 2.317 -11.234 15.136 hybrid contribution -0.018 -0.187 0.781 0.804 sum -9.894 2.130 -10.452 14.549 Atomic orbital electron populations 1.22383 0.95369 1.02506 1.02353 1.21522 0.93282 0.96681 0.90452 0.92794 1.21462 0.96586 0.99064 0.95560 1.18793 0.92175 0.93620 0.95002 1.21854 0.92543 1.34267 1.09426 0.92678 1.25979 0.97406 0.96540 1.00058 1.70146 1.02502 1.45642 1.39004 0.85442 0.78389 0.78285 0.79164 1.18648 1.20417 1.20412 1.60487 1.58147 1.09720 1.03444 1.22398 0.96037 0.94084 0.89943 1.22289 1.00487 0.99450 0.93702 1.22048 0.98449 0.96958 0.97967 1.22321 1.01011 0.98828 0.93561 1.22512 0.97577 0.98837 0.96792 0.91925 0.91818 0.91825 0.93392 0.93384 0.97841 1.00829 0.93091 0.83786 0.92885 0.90172 0.91739 0.92018 0.89929 0.91748 0.90556 0.93795 0.93813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 9.15 71.98 0.66 -3.66 16 2 C 0.09 3.14 2.45 44.91 0.11 3.25 16 3 H 0.05 2.03 7.86 -2.38 -0.02 2.01 16 4 C -0.09 -3.82 4.83 30.59 0.15 -3.67 16 5 C 0.04 2.31 4.86 29.85 0.15 2.45 16 6 C -0.54 -32.56 9.11 25.60 0.23 -32.32 16 7 H 0.05 3.18 7.74 -2.92 -0.02 3.15 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -59.34 13.29 21.45 0.28 -59.05 16 10 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 11 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 N -0.69 -22.88 5.53 -463.84 -2.57 -25.45 16 15 C 0.09 2.41 2.94 46.02 0.14 2.55 16 16 C -0.12 -2.74 6.27 31.32 0.20 -2.54 16 17 C -0.12 -2.41 6.80 31.32 0.21 -2.20 16 18 C -0.12 -2.86 6.83 31.67 0.22 -2.65 16 19 C -0.12 -3.85 6.58 31.91 0.21 -3.64 16 20 H 0.06 1.40 7.50 -2.38 -0.02 1.38 16 21 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 22 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.00 0.19 7.75 -2.39 -0.02 0.17 16 26 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 27 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 28 H 0.34 10.06 8.07 -89.70 -0.72 9.34 16 29 H 0.05 1.40 7.21 -2.39 -0.02 1.38 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.57 7.93 -2.39 -0.02 1.55 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -67.58 295.02 2.75 -64.83 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.28 Total: 13.68 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 2.73 Total: -42.13 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -2.28 Total: -84.50 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -67.58 2.75 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172475844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.864 kcal (2) G-P(sol) polarization free energy of solvation -67.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds